Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4242 ATGGTCTACCCGGGTTCAATGCAATTGTCGCGTGACGTTAGGCTCAAGAGCCATGGCAGATTTCGCAGTCTCCATCATAATCCGATGGGGGTTGCTAGATTACATTTGGTCACCATCAATCTTTTACCAAGTAGTTTGAAGCATGATTCTTTGGATCTACGTCTTCTGAATAGAGTTCATGCCCCACTAAAGCATGTGCCATCCAGATCTAATATTTTTGTATGTCGGTCTGTCATTATACCGAGTGGAGGGAGTGGGATTCCACTGATGAAATCTGCTAGTGTTTTTTTATCAAGGTCATATGATGCTTTACTAGGAAGCCCTATTTTGCTCCGCTTGATCCCAGCCCTTGGTATTATTGCCTTTGCTGTTTGTGGTCTTGAGCCACTCCTACGTCTCAGCAGGATTCTATTTCTTCAAAGAACTGACACTGACAGTAGTTGGAACAAAAGTAGTTCGCGATATATAATGACATCTTACTTTCAGCCAATACTGTTGTGGACAGGGGCAATGCTCATATGCAGGGCATTAGATCTATTGGTCTTACCATCTGAGACTAGCCAGGCCGTGAAGCAACGACTGCTGAATTTTGTGAGATCGTTGTCAACTGTGATTTCATTTGCTTACTGTCTATCAAGCTTAATTCAACAAGCAAATAAATTCTTTCTGGAGACAAATGACTCCAGTGATGCAAGAAATATGGGCCTGGATTTTGCGGGGAAGGCAGTATATAGTGCTGTATGGGTTGCTGCTGTGTCATTGTTCATGGAGTTGCTAGGTTTCTCCACACAAAAGTGGTTAACTGCTGGTGGTTTGGGCACAGTATTGCTAACTCTTGCAGGTCGCGAGATATTCACGAACTTCCTTTCAAGTATAATGATTCATGCGACCCGGCCATTTATTTTAAACGAGTGGATTCAAACAAAGATTGAAGGATATGAGGTTTCTGGTACCGTTGAGCATGTAGGCTGGTGGTCACCAACCATTGTGAGAGGTGATGATCGTGAGGCAGTTCATATTCCTAATCACAAGTTCACTGTAAATGTTGTTAGAAATCTTAGTCAGAAAACTCATTGGCGTATCAAGAGTTACATTGCTATCAGTCACTTGGATGTTAACAAAATTAATATTATTGTAGCTGATATGCGCAAGGTTTTGGCTAAAAATCCTCAAGTAGAGCAGCAAAGATTGCACAGAAGGGTCTTTTTGGAGAATGTAAATCCTGAAAATCAGTCTCTAATGATATTAATATCTTGCTTTGTAAAAACTTCACATTTTGAAGAGTACCTCTGTGTTAAGGAGGCAATCCTTCTGGATCTTCTCAGAGTTGTCAGTCATCATCGAGCCCGGTTAGCCACTCCCATCCGCACAGTTCAGAAAATATACAGAGAGGCTGAGTCGGAAAATATACCCTTTGGGGACACCATTTTCAGTCGATCCAGAGCAGCGGTGAATCGACCATTCCTACTGATAGAACCACAATACAAGGTTAACGGCGAAGATAAAGTTAAACCTTCAACTCGTTCAACCAGTGGAAATGAGGAAAAAGATGCCAAGCTTGATGAAATTGTGGTATCTGATTCCAATGGAGATGATAATTTAGCAGCGACATCAACCTCCCCACCTGGCGTAAACTCCAAAGATAAATCCAAGTCAATTTCTGGGGTCCCAAACCAGAACATGGGTTCTGATAGCTCAGTTGAGAAGACCTCCAAAACCATGCAACCGAAAAAGGAAAGTGCAGGAGATGTAAGAAAGGGAAGTGCAGTACCTGCATCTAAAAACCTTTCACAAAGTGCTGTGCCTGAAATTTCTCCTGTTACATCCCATGAGTCTGGTACTGCTTCGCAGTCAAAGCAAGATGGAGAGAAATCTTCTGTAACTTCATCACCTGTTAGGTCTCCTTTGGAGGAGAACATTCTTCTTGAGGTTGCTCTTGAAGGCTCAAAGCGAACTCTTCCAATTGAGGAAGAAATGACTTCATCTCCTACACCTGCAGAGTCACAAGAATTTGCTGTCCAAAGGAATGGGAGTGGACCTCCTTCTAACAAGGATAAGAAGGATGGTCCTATATCTTCATTTCCAACTACTAAGCAGAATGAGTAG 2106 0.4236 MVYPGSMQLSRDVRLKSHGRFRSLHHNPMGVARLHLVTINLLPSSLKHDSLDLRLLNRVHAPLKHVPSRSNIFVCRSVIIPSGGSGIPLMKSASVFLSRSYDALLGSPILLRLIPALGIIAFAVCGLEPLLRLSRILFLQRTDTDSSWNKSSSRYIMTSYFQPILLWTGAMLICRALDLLVLPSETSQAVKQRLLNFVRSLSTVISFAYCLSSLIQQANKFFLETNDSSDARNMGLDFAGKAVYSAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSIMIHATRPFILNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKSYIAISHLDVNKINIIVADMRKVLAKNPQVEQQRLHRRVFLENVNPENQSLMILISCFVKTSHFEEYLCVKEAILLDLLRVVSHHRARLATPIRTVQKIYREAESENIPFGDTIFSRSRAAVNRPFLLIEPQYKVNGEDKVKPSTRSTSGNEEKDAKLDEIVVSDSNGDDNLAATSTSPPGVNSKDKSKSISGVPNQNMGSDSSVEKTSKTMQPKKESAGDVRKGSAVPASKNLSQSAVPEISPVTSHESGTASQSKQDGEKSSVTSSPVRSPLEENILLEVALEGSKRTLPIEEEMTSSPTPAESQEFAVQRNGSGPPSNKDKKDGPISSFPTTKQNE* 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4242 701 Gene3D - 300 355 IPR023408 -
Lja1g4242 701 SUPERFAMILY Sm-like ribonucleoproteins 284 354 IPR010920 -
Lja1g4242 701 MobiDBLite consensus disorder prediction 527 701 - -
Lja1g4242 701 Pfam Mechanosensitive ion channel 241 448 IPR006685 GO:0016020|GO:0055085
Lja1g4242 701 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 693 IPR045042 -
Lja1g4242 701 MobiDBLite consensus disorder prediction 591 635 - -
Lja1g4242 701 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC 1 693 - -
Lja1g4242 701 MobiDBLite consensus disorder prediction 500 519 - -
Lja1g4242 701 MobiDBLite consensus disorder prediction 655 680 - -
Lja1g4242 701 Gene3D - 194 298 - -
Lja1g4242 701 MobiDBLite consensus disorder prediction 530 570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4242 Lja-Chr1 54335810 54346148 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4242 1 673 Mechanosensitive Ion Channel Family AT1G58200 54.035 0.0 723
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4242 K22047 - gmx:100796022 1075.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4242 1 54335810 54346148 Lja1g4242 1 54335810 54346148 ECH