Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4239 ATGGCCTATTTGGGTTCAATGGGATTGTCCCATGGCGTTAGGCTATTATACACTAGTGATAGAAAATGTAGTTTTTGTCAGAGGCCCTTGCCTGGTGACCGGTTGTGTTTTGTTACAATCAATCTTTCACCTGTTAGTTTGAGGCAGAATTCTTCAGCACTCCTATTTTCTGGATTACATGCCCCACTTAAGCCTGTACCTTCTAGATGTAATGTTTTGCTGTGTCGGTCTGTCCTAACGCCAGCTGGAGGGTTTGAGGCGCCGCTAGTGAAAGCAGCTACTATTTCTTTGTCAAGGTCATATAATGCTATATCAAGACCAATTTTGCTTCAATTGATCCCTGCCCTTGGTATCATTGGCTTTGCTTTCTTTGGTCTTGAGCCGTTCCTGCGCTTGAGCAGGGTTCTATTTCTCCAAGATAGAGTTGATAGAAGTTGGAAGAAAAGTAGTTCACGTTATATTATGACCTCTTATTTGCAACCTTTGCTGCTGTGGATTGGGGTAATGCTTATCTGCAGGGATTTAGATCCACTAGTCCTACAATCAGAAACCGGTCAGATTATGAAGCAACGATTGCTGAGTTTTGTACGATCTTTGTCAACCGTGCTTACATTTGCTTACTGTTCTTCAAGATTAATTCGACAAGCACAGAAATTCTACATGGACACAGATGACTCCAGTGATGAAAAAAATATGAGCATTGATCTTATTGGGAAAGCTGTATATACAGCAATATGGGTCGCTGCTGTCTCATTGTTCATGGAGTTGATTGGTTTCTCCACGCAGAAGTGGTTGACTGCTGGTGGTTTGGGCACAGTATTACTTTCCCTTGCAGGTCGTGAGATATTTACAAACTTCCTTTCAAGTGTAATGATCCACGCAACTCGTCCATTTGTGGTGAATGAGCGGATTAAAACGAAGATTAAAGGATATGAGGTTTCTGGTAAAGTTGAGCATGTGGGATGGTGGTCACCAACACTAGTTAGAGGTGCTGATTGTGAAGCAGTTCATATTCCTAATCACAAGTTGAGTGTAAATGTTGTGAGGAATCTTAGTATGAAATCTCATTGGCGCATTAAGACTCATCTTGCTATTAGTCACATGGATGTTAGCAAGATTAATAGTATCATAGCTGATATGCGGAAGGTTTTGGCGAAAAATCCTCAAGTAGAGCAGAAAAAATTGCACAGAAGGGTTTTTTTGGAGGATATCAATCCAGAAAATCAGGCTCTTATGATATTGGTCTCTTGCTTTGTTAAAACTTCACATTCTGAAGAGTACCTCCGTGTTAAGGAGGCAATTCTCTTGGATCTGCTAAGAGTCATCAGTCATCACGGAGCTCGGCTAGCCACTCCCATTCGCACAGTTATTAAGATGTACAGCGATGTGGATTTTGAAATTGATCCATTTGATGACACTACTTTCACTCGTTCCAGAGCAAAGGCAAAGCGTACATTCCCACTTACAGATCCATCTCAAAATTAA 1485 0.4128 MAYLGSMGLSHGVRLLYTSDRKCSFCQRPLPGDRLCFVTINLSPVSLRQNSSALLFSGLHAPLKPVPSRCNVLLCRSVLTPAGGFEAPLVKAATISLSRSYNAISRPILLQLIPALGIIGFAFFGLEPFLRLSRVLFLQDRVDRSWKKSSSRYIMTSYLQPLLLWIGVMLICRDLDPLVLQSETGQIMKQRLLSFVRSLSTVLTFAYCSSRLIRQAQKFYMDTDDSSDEKNMSIDLIGKAVYTAIWVAAVSLFMELIGFSTQKWLTAGGLGTVLLSLAGREIFTNFLSSVMIHATRPFVVNERIKTKIKGYEVSGKVEHVGWWSPTLVRGADCEAVHIPNHKLSVNVVRNLSMKSHWRIKTHLAISHMDVSKINSIIADMRKVLAKNPQVEQKKLHRRVFLEDINPENQALMILVSCFVKTSHSEEYLRVKEAILLDLLRVISHHGARLATPIRTVIKMYSDVDFEIDPFDDTTFTRSRAKAKRTFPLTDPSQN* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4239 494 SUPERFAMILY Sm-like ribonucleoproteins 282 352 IPR010920 -
Lja1g4239 494 PANTHER MECHANOSENSITIVE ION CHANNEL-LIKE PROTEIN 1 491 - -
Lja1g4239 494 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 491 IPR045042 -
Lja1g4239 494 Gene3D - 192 296 - -
Lja1g4239 494 Pfam Mechanosensitive ion channel 239 448 IPR006685 GO:0016020|GO:0055085
Lja1g4239 494 Gene3D - 297 350 IPR023408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4239 Lja-Chr1 54322069 54328859 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4239 33 492 Mechanosensitive Ion Channel Family AT1G58200 61.688 0.0 595
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4239 K22047 - gmx:100797302 755.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4239 1 54322069 54328859 Lja1g4239 1 54322069 54328859 ECH