Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4238 ATGAACAGTGGTAGCAAATCGGAAGGAGAACGGTTACTCGAGATCGCAGAGCAACAGTTGCAGAAACGCGATCTCAAAGGCTCACGGCAACTCGCTCTCATCGCTCAAGAAAACGAACCGCTTCTCGAAGGCTCCGATCAGATCCTCGCCATAATCGACGTCCTCGAAGCGGCGGAGAAGCCGCTGACAACCACCGCATCCACCACCACCAACAACCGCAACAATCTCGATTTCTACGCGATTCTCCAGGTCGATCATCGTGATTCACAGGATCTCAACCTCATCAAGAGGCAGTACCGGAGGCTCGCGCTTCTGCTACATCCTGATAAGAATCTCTTCTCGTTCTCGCACCATACGTTTGACCTCGTTTCTCACGCCTGGGCTTTGTTGTCCGATCCGGCGCAGAAGGAGATCTACGATGCGGGTTTGGGTTGTGCTCCGGGAAGCTTCTGGACCGCGTGTCCGTACTGTTTTCATATGTATGAGTACCCTGGGGTTTACGAGGGGTGTTGCTTGCGGTGCCAGAAATGCTCGCGGCCGTTTCATGGAGCGGCGGTGAATTCTATGCCGGAGATGGTGCCGGATCAGGAGGCTTATTATTGTTCCTGGGGATCGTTTCCGATGGGATTTGTGTTTGAGAGTTTGGAGAACGGTGGTGGGAGTAATCAGAAACCGGCGGCGGCGGTGGCGGTGGTTCCTAATCGGGTGGCGGTTCCTGATGGTGGTTCTGTTAAGAAGAAGCGAGGAAGGCCGCGAAAGGTGGCGGTTTGA 771 0.5447 MNSGSKSEGERLLEIAEQQLQKRDLKGSRQLALIAQENEPLLEGSDQILAIIDVLEAAEKPLTTTASTTTNNRNNLDFYAILQVDHRDSQDLNLIKRQYRRLALLLHPDKNLFSFSHHTFDLVSHAWALLSDPAQKEIYDAGLGCAPGSFWTACPYCFHMYEYPGVYEGCCLRCQKCSRPFHGAAVNSMPEMVPDQEAYYCSWGSFPMGFVFESLENGGGSNQKPAAAVAVVPNRVAVPDGGSVKKKRGRPRKVAV* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4238 256 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 4 228 - -
Lja1g4238 256 Gene3D DnaJ domain 63 146 IPR036869 -
Lja1g4238 256 SMART dnaj_3 76 135 IPR001623 -
Lja1g4238 256 ProSiteProfiles dnaJ domain profile. 77 143 IPR001623 -
Lja1g4238 256 PANTHER CHAPERONE DNAJ-DOMAIN PROTEIN 4 228 - -
Lja1g4238 256 ProSitePatterns Nt-dnaJ domain signature. 120 139 IPR018253 -
Lja1g4238 256 CDD DnaJ 77 132 IPR001623 -
Lja1g4238 256 Pfam DnaJ domain 77 140 IPR001623 -
Lja1g4238 256 SUPERFAMILY Chaperone J-domain 68 142 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4238 Lja-Chr1 54316148 54317160 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4238 2 211 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 46.121 1.13e-69 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4238 - - lja:Lj1g3v1560100.1 518.079