Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4235 ATGCTACTGACACACAACCACCGCCACAATCACTCTCCCACCTCACACTCCCACATGGCTTGTTCTTGTTCTTGTTCCAGTGCCACCACACCTTCATTTTCATTCTTCCTCATCATCATCACTCTGTTCTTCTTCCCCTGTATTGCTGCTTCCAACGAGCCTCTCCCAAGTCCCAACCTCACCACCACAACCCGACCTCCGCCGTCAATAACAACACTCTACGACATCGGAAAGCCCTCCACGTCAGGGTTCAAACCAGGCGTAGCCATCGTAGTCGGCGTTCTCACTCTCGTTTTCTCCCTCACCTTCATCCTCCTCCTCTACATGAAGCACTGCAGCGGCAGCGACGGCGTCGTTTCCTCCTCCGCCGCCGGCATCTCACCGTCCTCACGAGCAATCCCGTCGTACAGCGGCAGAAAAAACTCCGGCATTGACCGCTCAGTGGTGGAATCCCTCCCAATCTTCCGATTCGGATCCCTCACGGGTCAAAAGGAAGGTCTCGATTGCGCGGTTTGCTTGAGCCGGTTCGAATCCGCGGAGGTTCTGCGGTTGTTACCGAAATGCAAGCACGCGTTTCACGTGGAGTGCGTTGACACGTGGCTCGACGCGCACTCCACCTGTCCTCTTTGCCGTTACCGGGTGGATCCGGAGGACATTCTGTTAGTCGAGTCATCACGCCACAATAACCAGAATAGCATTCAACGGAGGAGCAAGGAAGAGGAAGAAGAAGAAGATGAACGTTGTTCAGACCTTGAGAGTGGAAGAAGAAGAAGAACAGAGATCGAGGAGTATCATCGGAGACACTCGTCGGTGGAGGTAGGAGAATCAGAACGTGAAAAGGAAAAAAGGAAAACGACGTCGTTTAGAAGGTCGCTGGATAGCGTTGGAGTTGTTAGTGTTGGTTGTTTTGTGCGTCCACGGAAAGATGGCATGTTGTTAACGCGAGATGAGGAGAGGAGTAGCGTGGAACAGAGGAGGTTGGAGCACCGGATCATTGTTTCCCCGTCGCCGCGGAGCAGCTGTGGGGTCCACCAGCGGTGGAGCGACGTGCAGGCGGTGGATTTGTTGTACCTGACGTCGGAGATGATACTGAGCGAGTCGCGCCGCGCCGTGAATGGCAACAACAACCGTAACTGTACGGCGGGTAGTGGTGGTAATGATGGTGACGTCGTTGGCAGTTGGAATGGCAGGGGAATAATTAATTCGAGAAGTGTGTCTGAGATCACGGGGCTCAGCAGGTTCTCCAGAAGCAGGAGCAGTAGCAATCGTAATAATAGTAATAATAACAGCAACGGGACTGGAGGAGCAACGGGGAGAGAGGAAGGGTTGGTGTCGAGGTGGTTGGCTTGGATATCTCAATCTCATTCACATCCACATCCACATCCACATCCACATCCAGCTGTACGGTAG 1410 0.5348 MLLTHNHRHNHSPTSHSHMACSCSCSSATTPSFSFFLIIITLFFFPCIAASNEPLPSPNLTTTTRPPPSITTLYDIGKPSTSGFKPGVAIVVGVLTLVFSLTFILLLYMKHCSGSDGVVSSSAAGISPSSRAIPSYSGRKNSGIDRSVVESLPIFRFGSLTGQKEGLDCAVCLSRFESAEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLVESSRHNNQNSIQRRSKEEEEEEDERCSDLESGRRRRTEIEEYHRRHSSVEVGESEREKEKRKTTSFRRSLDSVGVVSVGCFVRPRKDGMLLTRDEERSSVEQRRLEHRIIVSPSPRSSCGVHQRWSDVQAVDLLYLTSEMILSESRRAVNGNNNRNCTAGSGGNDGDVVGSWNGRGIINSRSVSEITGLSRFSRSRSSSNRNNSNNNSNGTGGATGREEGLVSRWLAWISQSHSHPHPHPHPHPAVR* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4235 469 PANTHER RING-H2 FINGER PROTEIN ATL43 63 456 - -
Lja1g4235 469 SUPERFAMILY RING/U-box 163 216 - -
Lja1g4235 469 MobiDBLite consensus disorder prediction 249 287 - -
Lja1g4235 469 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 63 456 - -
Lja1g4235 469 Pfam Ring finger domain 168 211 IPR001841 -
Lja1g4235 469 MobiDBLite consensus disorder prediction 225 287 - -
Lja1g4235 469 ProSiteProfiles Zinc finger RING-type profile. 169 211 IPR001841 -
Lja1g4235 469 MobiDBLite consensus disorder prediction 411 436 - -
Lja1g4235 469 CDD RING-H2_EL5_like 168 211 - -
Lja1g4235 469 MobiDBLite consensus disorder prediction 372 391 - -
Lja1g4235 469 MobiDBLite consensus disorder prediction 411 439 - -
Lja1g4235 469 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 143 218 IPR013083 -
Lja1g4235 469 SMART ring_2 169 210 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4235 Lja-Chr1 54198189 54199741 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4235 81 450 C3H Transcription Factor Family AT5G05810 45.658 1.12e-77 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4235 K19041 - jre:109009455 337.421