Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4232 ATGATCTTACCACTCATACCTCCACATCTCCAATCGTGTACTGTTGATGCCGTACATTTTTCTTCTGCGATTTTGATTCTCATTCAACATCCAAAGAATGAAGCAGCTTCAGACATGTTCTCAAAGCTTCACCACCAACAACAACAACACCACCACCACCAATCACCACACCCACCACAACACATCTTCCCTCACAACCCCTTCCAACTCACCCACACCGCCGCCGTCGTGAGGCGACCCAGAGGTCGTCCACCCGGGTCAAAAAATCGGCCAAAACCGCCTTTGATCATCACCCGCGACCCGGAACCCGCTATGAGCCCTTACATTCTCGAAGTCGCCGGCGGAAACGATGTCGTTCAAGCCATCGCGCTTTTCAGCCGCCGCAAGAACATGGGGCTGTCCATCCTCACCGGTTCTGGAACCGTCGCGAACGTCACTCTCCGGCAACCTTCAACCACTCCCGGAGCGACGGTTACTTTTCACGGCCGCTTCGACATCCTCTCCATCAACGCTACGTTTCTTCCTCAGCAACAGCCGGCGCTTTCCGGCGGATTCTCCATCTCGCTCGCTGGACCGCAAGGGCAGATCGTCGGAGGGATTGTCGCCGGCGGATTGATGGCTGCCGGGACGGTGTTCGTGGTGGCTGCTTCGTTCAACAGTCCGTCGTACCACAGGCTTCCCCCGCCGGAGGAAGAGGCTGGGAACTCGGCCTCAGCAGGGGATGTACAGTCGCCGCCTGTGTCCGGTGGCGGTGATGATCAGGCGGCGTCGTGTGGGATGTCAATGTACAGCTGTCAGTTGGCTTCGGATGTGATTTGGGCTCCAACGGCGAGGCCACCGCCACCACCGTACTGA 855 0.5754 MILPLIPPHLQSCTVDAVHFSSAILILIQHPKNEAASDMFSKLHHQQQQHHHHQSPHPPQHIFPHNPFQLTHTAAVVRRPRGRPPGSKNRPKPPLIITRDPEPAMSPYILEVAGGNDVVQAIALFSRRKNMGLSILTGSGTVANVTLRQPSTTPGATVTFHGRFDILSINATFLPQQQPALSGGFSISLAGPQGQIVGGIVAGGLMAAGTVFVVAASFNSPSYHRLPPPEEEAGNSASAGDVQSPPVSGGGDDQAASCGMSMYSCQLASDVIWAPTARPPPPPY* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4232 284 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 55 283 IPR014476 GO:0003680
Lja1g4232 284 SUPERFAMILY AF0104/ALDC/Ptd012-like 104 232 - -
Lja1g4232 284 Gene3D - 106 237 - -
Lja1g4232 284 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 17-RELATED 55 283 - -
Lja1g4232 284 MobiDBLite consensus disorder prediction 78 100 - -
Lja1g4232 284 MobiDBLite consensus disorder prediction 224 255 - -
Lja1g4232 284 CDD DUF296 107 218 IPR005175 -
Lja1g4232 284 ProSiteProfiles PPC domain profile profile. 102 240 IPR005175 -
Lja1g4232 284 Pfam Plants and Prokaryotes Conserved (PCC) domain 107 219 IPR005175 -
Lja1g4232 284 MobiDBLite consensus disorder prediction 40 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4232 Lja-Chr1 54164368 54171859 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4232 76 282 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 63.677 2.81e-91 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4232 - - gmx:100788098 324.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4232 1 54164368 54171859 Lja1g4232 1 54164368 54171859 ECH