Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4223 ATGGCACCCAGTTTTGACTGCGTTTCTAGCCTCCTCTGTGCCGATGAGGACAGCACTGTTTTCGATGACGGCGATTATGCCGGTTCGGCGGCGGCGTCGGAGGTGCCGGAGGTGTACGATGAAACATGGCGGCGGTCTAGATACCATCATCAGAGGAGCCAGGGGTTTGGTGACCCTGATGAGTTGCCATTGCTGAGTGATGAGTGCTTGGCGGTGATGGTGGAGAAGGAATGCCAGTTCTGGCCTGGTGCTGATTACTTGAACAAGTTTCGGACTCGTGATTTGGACTTTGGGGCTCGAAAGGAAGCCATTGATTGGATTCAAAAGGTTCGGATGCATTTCGGTTTTGGTCCTCTCTGTGCATATCTATCCATAAATTTCTTTGACCGGTTCCTTGCTGTATATGAATTTCCCAAGGGAAGAGCTTGGACAATGCAATTGTTGGCTGTGGCGTGTTTGTCTCTGGCAGCCAAAATAGAAGAGACTGATGTTCCTCTGCCTCTTGATTTGCAGGTTGCTGAATCCAAGTTTTTGTTTGAGGCTAAAACAATTCAAAGAATGGAGCTTCTGGTCCTGAGCACATTGAAGTGGAAAATGCAGGCTATTACTCCATTCTCTTTTATTGATTACTACCTTCGCAGGGTCGATGATGATGGAAGTTCATTAAGTTCTTTAATTTCGCGATCCACCCAACTTATATTGAGCACTATAAGAGGGCTTGACTTCTTGGCATTCAAACCTTCAGAGATTGCAGCAGCTGTGGCAATGTATGTCGTGGGGGAAACCCAATCAGTTGACACTGACAAAACAATTTCCATCCTGATTCAACATGTAGAAAAGGAGAGGTTAATGAAGTGTGTTGAAATGATTCATGAGCTGTCATCCAACAAGGATTCAAGTGCTTCTGCACCTTGTGTGCCACAAAGCCCAATAGGTGTGTTGGAGGCTGGGTGCTTCAGCTACAAAAGTGATGTTGACACAAATGCTGGTTCTTCATGTTCTTCAGATAATAGCCCAAGTGCTAAAAGGAGGAAACTACACTAA 1044 0.4598 MAPSFDCVSSLLCADEDSTVFDDGDYAGSAAASEVPEVYDETWRRSRYHHQRSQGFGDPDELPLLSDECLAVMVEKECQFWPGADYLNKFRTRDLDFGARKEAIDWIQKVRMHFGFGPLCAYLSINFFDRFLAVYEFPKGRAWTMQLLAVACLSLAAKIEETDVPLPLDLQVAESKFLFEAKTIQRMELLVLSTLKWKMQAITPFSFIDYYLRRVDDDGSSLSSLISRSTQLILSTIRGLDFLAFKPSEIAAAVAMYVVGETQSVDTDKTISILIQHVEKERLMKCVEMIHELSSNKDSSASAPCVPQSPIGVLEAGCFSYKSDVDTNAGSSCSSDNSPSAKRRKLH* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4223 347 SUPERFAMILY Cyclin-like 184 294 IPR036915 -
Lja1g4223 347 CDD CYCLIN 100 192 IPR013763 -
Lja1g4223 347 Pfam Cyclin, N-terminal domain 70 199 IPR006671 -
Lja1g4223 347 Pfam Cyclin, C-terminal domain 202 300 IPR004367 -
Lja1g4223 347 Gene3D - 83 200 - -
Lja1g4223 347 PANTHER CYCLINS 1 345 IPR039361 -
Lja1g4223 347 ProSitePatterns Cyclins signature. 100 131 IPR006671 -
Lja1g4223 347 SUPERFAMILY Cyclin-like 57 199 IPR036915 -
Lja1g4223 347 SMART cyclin_7 105 193 IPR013763 -
Lja1g4223 347 Gene3D - 71 290 - -
Lja1g4223 347 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 1 345 - -
Lja1g4223 347 MobiDBLite consensus disorder prediction 327 347 - -
Lja1g4223 347 SMART Cyclin_C_2 202 322 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4223 Lja-Chr1 53977132 53980335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4223 48 327 Core Cell Cycle Gene Families AT2G22490 44.040 1.22e-82 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4223 K18810 - gmx:547739 458.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4223 1 53977132 53980335 Lja1g4223 1 53977132 53980335 ECH