Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4217 ATGGGTTACCTCTCTTGCAATGCCGAATCCGCCATCGCCACCTGCGACCCACACTTCACCAGAACCACCACCACCACCCGCCGCCACCGCAACACCATCACCGAGTTTCACTACACCGACCTCCTCGCCGCCACCAACTCCTTCTCCGCCCAAACCTTCTTAGGCAAAGGCAGCCACGGCAAAGTCTACAAAGCCACCCTCCACAACAACCACCACGTCGCCGTCAAAACCACCAAGCATCCTCCCTCACACTCACACAAACAAAAACGCCACACCACCACCTGCACCGGCTGCGGCAACTGCACCAGCCCCGCCGAAAACGAGATCGAGATTCTCTCCCACGTCCCAAGCCCCCGCCTCGTCAACCTCATCGGCTACTGCACCGACCCGAACGGTAACAAGCTCATCGTCGTTGAGTACATGCCAAACGGTTCGCTTCATGAACTTCTTCACAAATCGGCTCGACCGCCTGGCTGGACCAAACGGATCCGGTTCGCGCTTCAGGTGGCGAAAGCGGTTCAGGCGCTTCATTCGTCAAACCCGCCGGTGATTCACCGCGATATCAAATCGTCGAACGTGCTCATCGACGGCGATTGGAACGCCAGGCTCGGCGATTTCGGCCTCGCGCTCCGGGGACACGTGGAGGACGTTCGCGTCAAGTGCACGCCGCCGGCGGGGACGTTAGGGTATCTCGATCCTTGCTATCTTGCGCCGGGGGATCTGAGCGCTAAGAGTGACGTCTTCAGCTTTGGGATCTTGCTTCTGGAGATTATCAGCGGGAGGAATGCGATTGACGTGAACTTCAGTCCGCCGTCGGTGGTGGACTGGGCGGTGCCGTTGATCCGGCGCGGGGATTTCGATGGGATTTGTGACAGGCGGATCGGCACGCCGTCGGATCTTGTGGTGACGCGGCAGGTGGCGGTGCTGGCGGCGAGGTGTGTGAGATCTTCGGCGGAGAGGCGGCCGGCGATGGTGGAGGTGGTGGAGTGTCTGAGATTGGTGAGGAAGAGGATTCACGCGTCGCCGATTTGGAGGAGGTTGAGGCGGCGCGTGGCGCGTGCGGAGAGTGAGAAGATGAAGTGGGAAGTGTATGAGGGTGATTGTGATGGGAGTGAGGAAGTTGTGAGGGTGGTTAAGAGTGGAAACCGCAGGAATAGGAAAGTATCCAGTGTGCCAGGTGTAGAGTATGAGGGTAGACCCTCTTCCAATAAAGTGGTGAGATCTAAATCCATTGGTTCTGGTTCTGTGATGAGGGGTGGTAGTAGTAGGAGTGGGGTTAAAAATGAGAATGAGTTTAGGAGATTGAAGGGTAAAATGGGAATGATGAGAGAGAGATTGGATAAGTCCCATTCAATGGGGGTTTTGCAAGGAGAGGTCCTTTTACATGATGGCAATGAGGGGATTCAATCAAGAGAGATGATGAGAGCAATGTCCAAGTTGGTGATTACGGATAAGTTGGAAAGGAAAATGCTTGAAAAGCCGTTGGTTGACTCCTATCATTGGGAGTCTTAG 1512 0.5582 MGYLSCNAESAIATCDPHFTRTTTTTRRHRNTITEFHYTDLLAATNSFSAQTFLGKGSHGKVYKATLHNNHHVAVKTTKHPPSHSHKQKRHTTTCTGCGNCTSPAENEIEILSHVPSPRLVNLIGYCTDPNGNKLIVVEYMPNGSLHELLHKSARPPGWTKRIRFALQVAKAVQALHSSNPPVIHRDIKSSNVLIDGDWNARLGDFGLALRGHVEDVRVKCTPPAGTLGYLDPCYLAPGDLSAKSDVFSFGILLLEIISGRNAIDVNFSPPSVVDWAVPLIRRGDFDGICDRRIGTPSDLVVTRQVAVLAARCVRSSAERRPAMVEVVECLRLVRKRIHASPIWRRLRRRVARAESEKMKWEVYEGDCDGSEEVVRVVKSGNRRNRKVSSVPGVEYEGRPSSNKVVRSKSIGSGSVMRGGSSRSGVKNENEFRRLKGKMGMMRERLDKSHSMGVLQGEVLLHDGNEGIQSREMMRAMSKLVITDKLERKMLEKPLVDSYHWES* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4217 503 MobiDBLite consensus disorder prediction 386 434 - -
Lja1g4217 503 PANTHER - 1 479 - -
Lja1g4217 503 Gene3D Phosphorylase Kinase; domain 1 11 140 - -
Lja1g4217 503 ProSitePatterns Protein kinases ATP-binding region signature. 54 76 IPR017441 GO:0005524
Lja1g4217 503 Gene3D Transferase(Phosphotransferase) domain 1 141 346 - -
Lja1g4217 503 Pfam Protein tyrosine and serine/threonine kinase 51 331 IPR001245 GO:0004672|GO:0006468
Lja1g4217 503 MobiDBLite consensus disorder prediction 403 426 - -
Lja1g4217 503 ProSitePatterns Serine/Threonine protein kinases active-site signature. 183 195 IPR008271 GO:0004672|GO:0006468
Lja1g4217 503 SUPERFAMILY Protein kinase-like (PK-like) 29 339 IPR011009 -
Lja1g4217 503 SMART serkin_6 48 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g4217 503 PANTHER OS01G0750732 PROTEIN 1 479 - -
Lja1g4217 503 ProSiteProfiles Protein kinase domain profile. 48 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4217 Lja-Chr1 53897401 53899680 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4217 6 342 Receptor kinase-like Gene Family AT3G59420 37.356 1.58e-64 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Lja1g4217 PK_Tyr_Ser-Thr 8.6e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4217 - - cam:101503747 657.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4217 1 53897401 53899680 Lja1g4217 1 53897401 53899680 ECH