Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4212 ATGGAGTTTGACGACCACGAAGACCTCGAGGAAGAAGAGGAGGAGGAAGAAGAAGAAGAAGAAGAAGAAGGAGAGGTCGAGATGGGGTTCACGGTGGCGCCGCCGGGATTTGACTCGCTAGGAAACTCAGCTGCGCGGTCCAAAACAGGCGGTGGCATAGAACCAGAAGGAGGTGCAGCAGCCACCGCCTTAGGCGTTGGTCGCAAAAATGGGTCCACAGGGACAGTCAGATACAGAGAATGTCAAAAGAACCACGCCGTCGGTATTGGCGGCCACGCCGTCGATGGCTGCTGCGAGTTTCTCGCCGCCGGACAGGAAGGTACGCTGGAGGCCGTAATCTGCGCCGCCTGTAACTGCCACCGGAACTTCCACCGCAAGGAGACCGGCGGCGAAATCACCTCCTACCAGCCACGGCCGCCGCAGCAGCAGCCAGCCTACCACCACCAATTCTCCCCTTACTACCCCCGTGCCGAGCCACCGCCTTCCGCCGGCTACCTCCACCATCTGGTGACTCCACCGCTGTCCCAGCACCGGCCCTTGGCCCTTCCACCGGCGGGTTCCGGCGGGTTCAGAAGGGAGGAGGAAGACATGTCGAACCCGAGCAGCAGCGGCGGAGGAACGAAGAAACGGCACAGAACAAGGTTCACGCCGGAGCAGAAGGATAAGATGCTGGAATTTGCGGAGAGGGTAGGGTGGAGGATCCAGAAGCATGATGAAGCTGCGGTGGAGCAGTTCTGTGAGGAAGCTTGTATCAAGAGACATGTTCTCAAGGTTTGGATGCATAACAACAAGCACACTCTTGGTAAGAAACCCTAA 816 0.587 MEFDDHEDLEEEEEEEEEEEEEEGEVEMGFTVAPPGFDSLGNSAARSKTGGGIEPEGGAAATALGVGRKNGSTGTVRYRECQKNHAVGIGGHAVDGCCEFLAAGQEGTLEAVICAACNCHRNFHRKETGGEITSYQPRPPQQQPAYHHQFSPYYPRAEPPPSAGYLHHLVTPPLSQHRPLALPPAGSGGFRREEEDMSNPSSSGGGTKKRHRTRFTPEQKDKMLEFAERVGWRIQKHDEAAVEQFCEEACIKRHVLKVWMHNNKHTLGKKP* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4212 271 MobiDBLite consensus disorder prediction 1 56 - -
Lja1g4212 271 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 69 270 - -
Lja1g4212 271 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 208 264 IPR006455 -
Lja1g4212 271 SUPERFAMILY Homeodomain-like 196 269 IPR009057 -
Lja1g4212 271 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 69 270 - -
Lja1g4212 271 Pfam ZF-HD protein dimerisation region 76 128 IPR006456 -
Lja1g4212 271 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 77 127 IPR006456 -
Lja1g4212 271 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 78 127 IPR006456 -
Lja1g4212 271 MobiDBLite consensus disorder prediction 1 27 - -
Lja1g4212 271 Coils Coil 3 29 - -
Lja1g4212 271 MobiDBLite consensus disorder prediction 174 214 - -
Lja1g4212 271 Gene3D - 193 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4212 Lja-Chr1 53806032 53807327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4212 20 267 ZF-HD Transcription Factor Family AT4G24660 51.181 2.48e-67 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lja1g4212 ZF-HD_dimer 2.7e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4212 - - gmx:100820567 367.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4212 1 53806032 53807327 Lja1g4212 1 53806032 53807327 ECH