Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4203 ATGCAGGCCTCAGGCTGCTTCTTCCTCCTCCTCTCCTTGTTCCTCCTCTCATCATCACCCTTCACCTCTGCACTTTCCCACTCCCAAGCAAGTTTCATTGCTCGTCGCCAATTGTTACACTTTAAAGAGAATGGTGATCTCCCTGACTCCTACGTAGATACCTACAAAACTGATCTAACGTTCTCCAATCCTAGGCTCAAGCGTGCTTACATTGCACTTGAGGCATGGAAAAAGGCCATGTACTCTGACCCAACCAATTTCACAGACAATTGGATGGGTGCTGATGTTTGCTCTTACAATGGGGTTTTCTGCGCTCCCGCGCTCGACGACCCCAAGATTGAGGTAGTGGCTGGGATTGATCTCAACCACGCTGACATCGCAGGTTACATTCCTGTGGAGTTCGGTTTGTTAACAGATCTCGCCCTCTTGCACATTAACTCAAACAGGTTTTGTGGGGTTCTTCCAAAAAGCTTCTCCAACTTGAAGCTCATGTTTGAGCTTGATATAAGCAACAACCGCTTCGTTGGGAAATTCCCCGAACCTGTTCTTGAGCTTCCTGACATCAAATTCCTCGACATTAGGTTCAATGAATTTGAAGGGCCGTTGCCTTCTGAGCTTTTCAACAAACCGCTCGACGCAATTTTCTTGAACAATAACCGTTTCACGTCGACGATTCCAGACAATTTGGGATCTTCTCCAGCTTCGGTTATTGTTGTAGCGAACAACCATTTGAGCGGGTGCATTCCTTCGAGCATTGGTAACATGGAGAAGACATTGAATGAGATTGTGTTTATCAACAACAACCTCACTGGGTGCTTGCCGGCGGAGATCGGAAAGCTTAAACAGTTGAATGTGTTTGATGTGAGCGAGAACGTGATCGTTGGGATGTTGCCGAGGACATTCAAGGGGCTCGAGCGCGTGGAGGAGTTGTCTATTGCAGGGAACAAGCTCACCGGCTTTGTGCCACGTAGCATCTGCAATTTGCCGCGGTTGGTGAATTTCACTTTCTCGAATAACTATTTCAATGGTGAGGAAGATGGTTGTGTGCCAGGTACCAAAAAGGAGATTGTGTTGGAGGATGCTAGCAACTGCATTCCAGATAGGCCCAAACAAAAGGCGGGAAGCGCTTGCAATGTTGTTATAAGCAAGCCTGTTGATTGTGGCAAGGCCCAATGTGGAAATGGAAATCCTTCTAATTCCAATTCTCCATCTGAACCAAAACCAAAACCAACACCAACACCATCAGTACCAAAGCCTGAGCCCAAGCCCACTCCTTCTCCCTCCAATCCTTCAACACCATATGTACCAAAACCAACCCCTTCTTCACCATCCAATCCTTCAACACCAAAGCCACAACCTCAACCTACACCCACACCCTCCAACCCTCCAACATTTGAGAAGCCAACACCAACACCACAACCCAAACCAACACCAACACCAACACCAACAACACCATCACCATCACCATCAGTGCCGAAGCCTACTACCCCTCCAACTGAGAAGCCAACACCATCAACGCCGGTGCCAAAGCCTACACCTACACCCTCTAACCCTCCAACTGAGAAGCCAACACCATCAACGCCAGTGCCAAAGCCTACACCTACACCCTCTAACCCTCCAACTGAGAAGCCAACACCATCAATGCAGGTGCCAAAGCCTACACCTACACCCTCTAACCCTCCAACTGAGAAGCCAACACCATCTACGCCGGTGCAAAAGCCTACACCTACACCCTCTAACCCATCAACGGAGAAGCCAACATCACCACCATCATCCACACCTAGTCCTACACCTTCGAAACCCAATCCAACACCTGAAATCCCATCAACTCCGGTAGAGGGACCTGAGGAAGATCCTTTTGAACCAGCACCCAAACATCCACACAGGCGTCCCCATAATAGCCCTCCACCACCAGTTCAGTCCCCACCCCCACCGGTTCACTCTCCTCTACCACCAGTTCACTCTCCTCCTCCACCGGTTCACTCCCCACCACCACCAGTTCACTCTCCTCCTCCACCAGTCCACTCCCCACCGCCACCAGTCCACTCCCCACCACCACCGGTGCACTCTCCTCCTCCACCAGTCCACTCCCCACCGCCACCAGTCTACTCCCCACCACCACCGGTGCACTCTCCTCCTCCACCAGTCCACTCCCTACCACCACCCGTGCACTCTCCACCGCCACCGGTTCATTCTCCTCCTCCACCAGTCCACTCCCCACCACCACCGGTCCACTCCCCACCACCACCCGTGCACTCTCCACCGCCACCGGTTCATTCTCCTCCTCCACCAGTCTATTCTCCACCACCACCGGTGCACTCTCCTCCTCCACCAGTACACTCCCCACCACCACCCGTGCACTCTCCACCGCCACCGGTTCATTCTCCTCCTCCACCAGTCCACTCTCCACCACCACCGGTCCACTCTCCTCCTCCACCGGTCCACTCCCCACCACCACCTGTGCACTCTCCACCACCACCGGTCCACTCTCCTCCTCCACCAGTCCATTCCCCACCACCACCAGTGCACTCTCCACCACCACCAGTCCATTCCCCACCACCACCGGTTTATTCCCCACCACCACCGGTCCACTTTCCTCCTCCACCAGTCCAATCCCCACCACCACCGGTCAACTCTCCACCACCACCTGCTCCGATGGATGATGTCATTCTTCCCCCTATCTTTGGCGCTTCATATGCTTCACCACCTCCACCAGTCATCGCCGGCTACTAA 2733 0.5302 MQASGCFFLLLSLFLLSSSPFTSALSHSQASFIARRQLLHFKENGDLPDSYVDTYKTDLTFSNPRLKRAYIALEAWKKAMYSDPTNFTDNWMGADVCSYNGVFCAPALDDPKIEVVAGIDLNHADIAGYIPVEFGLLTDLALLHINSNRFCGVLPKSFSNLKLMFELDISNNRFVGKFPEPVLELPDIKFLDIRFNEFEGPLPSELFNKPLDAIFLNNNRFTSTIPDNLGSSPASVIVVANNHLSGCIPSSIGNMEKTLNEIVFINNNLTGCLPAEIGKLKQLNVFDVSENVIVGMLPRTFKGLERVEELSIAGNKLTGFVPRSICNLPRLVNFTFSNNYFNGEEDGCVPGTKKEIVLEDASNCIPDRPKQKAGSACNVVISKPVDCGKAQCGNGNPSNSNSPSEPKPKPTPTPSVPKPEPKPTPSPSNPSTPYVPKPTPSSPSNPSTPKPQPQPTPTPSNPPTFEKPTPTPQPKPTPTPTPTTPSPSPSVPKPTTPPTEKPTPSTPVPKPTPTPSNPPTEKPTPSTPVPKPTPTPSNPPTEKPTPSMQVPKPTPTPSNPPTEKPTPSTPVQKPTPTPSNPSTEKPTSPPSSTPSPTPSKPNPTPEIPSTPVEGPEEDPFEPAPKHPHRRPHNSPPPPVQSPPPPVHSPLPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVYSPPPPVHSPPPPVHSLPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVYSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVYSPPPPVHFPPPPVQSPPPPVNSPPPPAPMDDVILPPIFGASYASPPPPVIAGY* 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4203 910 MobiDBLite consensus disorder prediction 633 889 - -
Lja1g4203 910 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3 678 779 - -
Lja1g4203 910 MobiDBLite consensus disorder prediction 403 617 - -
Lja1g4203 910 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 678 779 - -
Lja1g4203 910 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 564 722 - -
Lja1g4203 910 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 2 408 - -
Lja1g4203 910 SUPERFAMILY L domain-like 77 344 - -
Lja1g4203 910 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3 564 722 - -
Lja1g4203 910 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3 2 408 - -
Lja1g4203 910 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3 711 807 - -
Lja1g4203 910 MobiDBLite consensus disorder prediction 392 910 - -
Lja1g4203 910 Pfam Leucine rich repeat 282 340 IPR001611 GO:0005515
Lja1g4203 910 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3 768 907 - -
Lja1g4203 910 Gene3D Ribonuclease Inhibitor 69 364 IPR032675 -
Lja1g4203 910 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 711 807 - -
Lja1g4203 910 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 768 907 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4203 Lja-Chr1 53712362 53715094 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4203 24 531 Trihelix Transcription Factor Family AT4G33970 54.012 8.37e-180 535
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4203 - - gmx:100780677 603.979