LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja1g4201	ATGGCTATCCGAGCAACCTTCTCCTTCTCCGGCTACGTCGCGCAGAATCTCGTCTCCTCTGCCGGCGTCCGTGTCGCCAACTCCCGTTGCGTCCAAGAATGCTGGATCCTCTCCCGCTTCTTTGGAACCAACCAGAAGCCCGATCGAGACCCATCGGGAACCGTTCGGAGCTTCTTCTCCGATCGTGAAAGGCCTAAATCGAATAGCTGGGTCAAAAACTCTGCCTATTCTACCCTCGCCGGTGAGATTCTCGGCGATAATTTTAGTAACCCGATTGTTTTAGGCTTGATCTCGGTGATGAAGTCTACGGCGGGTGTCTCCGCCGCGTCCTCCGCCGCAACCATGGGCGGCGTTTTTGGAATCTCCCCCATTAAGACCTCTTCGATCATACCCTTCTTGCAGGGTTCGAAGTGGCTTCCTTGCAACGAGTCCGTTCCTGACCCCACCTGGGAGGTTGATAAAGGTGGAACACCCTGTGTCGTGGAAGCTGCTTCTGCTGCTACTGCTACTGCTACTGCTACTGTAGCAGTGAGTGCGAACTCGAGGGAATTGGAAAGGACTAGCTGGATCACGAGGATGTTGAATGTTTGTTCTGAGGATACGAAAGCTGCATTCACTGCTATCACTGTTAGCTTGCTCTTCAAATCCTTCTTGGCTGAACCCAGGTCCATTCCCTCTGCTTCTATGTACCCAACTCTTGAAGTGGGTGATCGTATTCTAGCTGAGAAGGTTTCTTTCTTCTTTAGAAAGCCTGATGTGTCAGATATAGTGATTTTTACAGCACCTCCTATATTGGTGGAGAAGCTTGATTTTAGTCCATCTGATGTGTTTATAAAGAGGATCGTGGCGAAGGCTGGGGACATTGTTGAAGTTCGTGATGGGAAATTACTGGTGAATGGTGTTGCTGAAGAGGAGGATTACGTTTTAGAGCCGCTTAATTATGAGCTGGATCGAATGGTTGTGCCAAAAGGACATGTTTATGTGCTGGGAGACAATCGTAATAGGAGTTTTGATTCTCATAACTGGGGTCCACTCCCTGTGGAGAACATTCTTGGTAGATCCATGTTTCGCTACTGGCCTCCATCCAGAGTATCTGACACTGACACCCTTCATAGCCACCCACCTGGAAACAGTTCTGTGGTGGTTTCTTGA	1152	0.4957	MAIRATFSFSGYVAQNLVSSAGVRVANSRCVQECWILSRFFGTNQKPDRDPSGTVRSFFSDRERPKSNSWVKNSAYSTLAGEILGDNFSNPIVLGLISVMKSTAGVSAASSAATMGGVFGISPIKTSSIIPFLQGSKWLPCNESVPDPTWEVDKGGTPCVVEAASAATATATATVAVSANSRELERTSWITRMLNVCSEDTKAAFTAITVSLLFKSFLAEPRSIPSASMYPTLEVGDRILAEKVSFFFRKPDVSDIVIFTAPPILVEKLDFSPSDVFIKRIVAKAGDIVEVRDGKLLVNGVAEEEDYVLEPLNYELDRMVVPKGHVYVLGDNRNRSFDSHNWGPLPVENILGRSMFRYWPPSRVSDTDTLHSHPPGNSSVVVS*	384

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja1g4201	383	ProSitePatterns	Signal peptidases I signature 3.	326	339	IPR019758	GO:0004252\|GO:0016021
	Lja1g4201	383	PANTHER	THYLAKOIDAL PROCESSING PEPTIDASE 2, CHLOROPLASTIC-RELATED	1	368	-	-
	Lja1g4201	383	SUPERFAMILY	LexA/Signal peptidase	216	364	IPR036286	-
	Lja1g4201	383	PANTHER	SIGNAL PEPTIDASE I	1	368	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Lja1g4201	383	CDD	S26_SPase_I	220	353	IPR019533	GO:0004252\|GO:0006465
	Lja1g4201	383	Gene3D	Umud Fragment, subunit A	214	371	-	-
	Lja1g4201	383	Pfam	Signal peptidase, peptidase S26	201	359	IPR019533	GO:0004252\|GO:0006465
	Lja1g4201	383	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	277	289	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Lja1g4201	383	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	217	233	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Lja1g4201	383	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	321	340	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Lja1g4201	383	TIGRFAM	sigpep_I_bact: signal peptidase I	203	360	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Lja1g4201	383	ProSitePatterns	Signal peptidases I serine active site.	226	233	IPR019756	GO:0004252\|GO:0016021

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja1g4201	Lja-Chr1	53668679	53671665	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja1g4201	229	360	MADS-box Gene Family	AT1G29960	33.083	2.65e-14	67.4

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja1g4201	K03100		-	gmx:100817525	509.605

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja1g4201	1	53668679	53671665	Lja1g4201	1	53668679	53671665	ECH