Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4195 ATGACTCCTCCACCTTTCTCTAACAACCCCACGCTTCAGGAGCGGAGGCTCACCAGACAGAGGAAGCTCCGCTACCTCACCGACCACGACGCCGGCTTCCGTTTAACCACCGACACGTGTCCTTCCTCTTTTTCTTCTCTGCCGGCTTCTCCTCACCGCTCCGATTCCGACCACTGGTCTTCCTCCGCTGTCCCTCAACCGCTTCCCCGACCCGAATCGCAGTTGACCCGACGACCCGATATCCCCCTTCCCGGATCTCCGGCCTCCGAACATCCACCCTATGCTTTTTCCAGAAAGTCAGTGGATCATGATGGAGTGAGAGGTTGTAGGTCTTCAAGCAATTTGGGTAGACCCTCTTTTGATTCTTGCACTGCAAACGCAAAGGATGATTTGAGAGTGAATATTCCTTCTGATAGAGTCTTAACAGGAAATGGTTCGTGGAAGGATCCGAGAGAAGTTCTCTCTCATCATGATAATGACTCGGAAAGTTATATAACTTATATTTCCAACTTAAAATTGCATTTTGCTGCCAAGAGTGCCCCAACAAGCATATTCTCTAGTCCTGTTACTAGTCCACGTAGGTTGAGCAGTGTGGATTTATTTAATCCTTCCATCAATTTCCCTCCAGATTTTAATGATGTTTTCAAGGGGTTGCCGGCTAAGACTGCTCATAGTCCAACGGATCGGTCTCCTCTTCGTAGCCCTGGGTGCCACAGTCCTAAACTCAACCCTAGCATTCAAGGGGAATCTCTGAACCATAAAACTTGCCCCAGAGTGTGGCCTGAAAATAACCATGTTGATGCACATCCATTGCCCCTTCCACCAAAGGCTTCACCACCACCGCAAGCACAATCATCTACACTGCATCCGTCAAGTATCATGCATCACACAGCAGAAAATTCACCTTCTATGAAAGGTCAATGGCAGAAAGGAAAACTTATTGGTCGTGGATCGTTTGGAAGTGTTTATCTTGCAACAAACTTAGAGACTGGAGCCTCATGTGCCATGAAAGAGGTGGATCTGTTTCCTGATGATCCTAAATCTGCTGACAGCATAAAGCAACTAGAACAGGAAATCAAAATTCTTGGTCAACTACACCATCCCAACATTGTGCAGTATTATGGAAGTGAAATAGTTGGTGATCGATTGTGTATATATATGGAGTATGTGTATCCTGGATCACTTAATAAGTTTATGCATGAACATTGTGGGGCTATGACAGAATCTGTGGTTCGCAATTTTACTCGGCATATTCTTTCTGGATTGGCATACTTACATAGTACCAAGACTATCCACAGAGATATAAAGGGTGCAAACTTGCTGGTGGATTCATCAGGCATTGTTAAGCTTGCAGATTTTGGGGTGTCAAAAATTCTGACAGAGAAGTCATTTGAACTTTCATTAAAGGGAAGTCCCTATTGGATGGCTCCAGAGCTCATGATGGCTGCCATAAAGAAAGAATCTAAGCCTGAAATTGCAATGGCCATTGACATATGGAGCTTAGGGTGCACCATCATCGAAATGCTGACAGGAAAACCTCCATGGAGCGAGTTTGAAGGGCCTCAAGCCATGTTCAAGGTACTACACAAATCCCCAGATATACCCAAAAGTTTATCTTCAGAGGGACAGGACTTCCTTCAGCAGTGTTTCAGAAGGAATCCTGCAGATCGACCATCCGCAGCAGTTCTTCTTACACATGCATTTGTACAAAATCTGCATGATCAAGATGTTCTAGTTCATTCCCATGGATCTCCTAGAGTAGACTCCGGAACAAGAGATGATTCACGCAGACATAGTCCTGGACACAGTTCAAAAAATAGCCGTGGTGTAGTGCCAGCCTCCATGCGCGCACGGATACGTTACAAAATTTCTAATTTATTCGGAGACAGTTCAAAAAAGTATGACACTGATCAGGAATCTAGTCCTATTACATCTTCTCGTGACTCTCGTTGCTCACGGTCGGAAGCTAACAGTCCTCAATCTCCCTTGAAAGCTAGTACTCTCAACTCCTTGAGTGTTACTAAACCCACCAACTTACCTTTCACCATTATGAGAATCATGAGGCACCTTTGA 2073 0.452 MTPPPFSNNPTLQERRLTRQRKLRYLTDHDAGFRLTTDTCPSSFSSLPASPHRSDSDHWSSSAVPQPLPRPESQLTRRPDIPLPGSPASEHPPYAFSRKSVDHDGVRGCRSSSNLGRPSFDSCTANAKDDLRVNIPSDRVLTGNGSWKDPREVLSHHDNDSESYITYISNLKLHFAAKSAPTSIFSSPVTSPRRLSSVDLFNPSINFPPDFNDVFKGLPAKTAHSPTDRSPLRSPGCHSPKLNPSIQGESLNHKTCPRVWPENNHVDAHPLPLPPKASPPPQAQSSTLHPSSIMHHTAENSPSMKGQWQKGKLIGRGSFGSVYLATNLETGASCAMKEVDLFPDDPKSADSIKQLEQEIKILGQLHHPNIVQYYGSEIVGDRLCIYMEYVYPGSLNKFMHEHCGAMTESVVRNFTRHILSGLAYLHSTKTIHRDIKGANLLVDSSGIVKLADFGVSKILTEKSFELSLKGSPYWMAPELMMAAIKKESKPEIAMAIDIWSLGCTIIEMLTGKPPWSEFEGPQAMFKVLHKSPDIPKSLSSEGQDFLQQCFRRNPADRPSAAVLLTHAFVQNLHDQDVLVHSHGSPRVDSGTRDDSRRHSPGHSSKNSRGVVPASMRARIRYKISNLFGDSSKKYDTDQESSPITSSRDSRCSRSEANSPQSPLKASTLNSLSVTKPTNLPFTIMRIMRHL* 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4195 690 MobiDBLite consensus disorder prediction 580 614 - -
Lja1g4195 690 MobiDBLite consensus disorder prediction 630 665 - -
Lja1g4195 690 ProSiteProfiles Protein kinase domain profile. 308 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g4195 690 MobiDBLite consensus disorder prediction 218 308 - -
Lja1g4195 690 MobiDBLite consensus disorder prediction 37 113 - -
Lja1g4195 690 ProSitePatterns Protein kinases ATP-binding region signature. 314 337 IPR017441 GO:0005524
Lja1g4195 690 Pfam Protein kinase domain 309 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g4195 690 SUPERFAMILY Protein kinase-like (PK-like) 282 593 IPR011009 -
Lja1g4195 690 SMART serkin_6 308 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g4195 690 MobiDBLite consensus disorder prediction 282 307 - -
Lja1g4195 690 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA 10 681 - -
Lja1g4195 690 MobiDBLite consensus disorder prediction 586 601 - -
Lja1g4195 690 MobiDBLite consensus disorder prediction 37 69 - -
Lja1g4195 690 MobiDBLite consensus disorder prediction 637 665 - -
Lja1g4195 690 Gene3D Transferase(Phosphotransferase) domain 1 305 602 - -
Lja1g4195 690 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 10 681 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4195 Lja-Chr1 53477903 53484301 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4195 16 571 MAP Kinase Kinase Kinase AT5G66850 46.458 2.98e-151 453
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lja1g4195 Pkinase 1.1e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4195 - - gmx:100781764 915.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4195 1 53477903 53484301 Lja1g4195 1 53477903 53484301 ECH