Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4187 ATGGAAGCACCGAACAGAAGCTCCTCTACTACCACTTCTTCATCAGACTCATGCTCTTCAGATTCCAATCCTAGGAGTAACAATCCTAATAGACCTGAGAGGATCAAAGGTCCATGGAGCGCTGAGGAAGACAGGATCCTGACCCGGCTCGTGGAGCGGCATGGGGCACGAAACTGGTCCCTCATCAGCCGCTACATTAAGGGGAGGTCAGGGAAATCCTGCAGGCTGCGGTGGTGTAACCAGCTGAGCCCCACCGTGGAGCACCGTCCATTCTCGGTACAAGAGGATGAAACCATCATCGCCGCCCATGCACGGTTTGGGAACCGGTGGGCCGCCATTGCCCGGTTGCTGCCGGGTCGGACTGATAATGCCGTGAAGAATCACTGGAACTCCACGCTCAAGCGGAGGGTGCCCGGTGGTGGTGGTGGTTCTCATGAGGTGGGGCCAAGTTCTTCTGGTAGTGCTGCAGCTCGCATGGAGGATGATGATCCGTTGACCGCGTTGACTCTGGCTCCGCCGGGGATTGGGAATAGTTCTGTGGAGGAGGTTGTGGCTGACCACCACCACAACTACCAGCAACACCACCACCGGCAGTCGCAGTCGCAGGAGAGTGTTCCGGCGGGGTTTTGGGATGTGATGAGAGATGTGATTGCGAGGGAAGTGAGGGAATACGTGTCTTCCAATATTTCTCACAACTCGGGTTTTCATTAA 711 0.5612 MEAPNRSSSTTTSSSDSCSSDSNPRSNNPNRPERIKGPWSAEEDRILTRLVERHGARNWSLISRYIKGRSGKSCRLRWCNQLSPTVEHRPFSVQEDETIIAAHARFGNRWAAIARLLPGRTDNAVKNHWNSTLKRRVPGGGGGSHEVGPSSSGSAAARMEDDDPLTALTLAPPGIGNSSVEEVVADHHHNYQQHHHRQSQSQESVPAGFWDVMRDVIAREVREYVSSNISHNSGFH* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4187 236 MobiDBLite consensus disorder prediction 1 40 - -
Lja1g4187 236 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 31 86 IPR017930 -
Lja1g4187 236 MobiDBLite consensus disorder prediction 1 30 - -
Lja1g4187 236 PANTHER MYB TRANSCRIPTION FACTOR 2 222 - -
Lja1g4187 236 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 88 137 IPR017930 -
Lja1g4187 236 CDD SANT 38 80 IPR001005 -
Lja1g4187 236 ProSiteProfiles Myb-like domain profile. 83 133 IPR001005 -
Lja1g4187 236 PANTHER MYB PROTEIN-RELATED 2 222 - -
Lja1g4187 236 ProSiteProfiles Myb-like domain profile. 31 82 IPR001005 -
Lja1g4187 236 Gene3D - 90 137 - -
Lja1g4187 236 CDD SANT 90 133 IPR001005 -
Lja1g4187 236 SUPERFAMILY Homeodomain-like 33 129 IPR009057 -
Lja1g4187 236 SMART sant 35 84 IPR001005 -
Lja1g4187 236 SMART sant 87 135 IPR001005 -
Lja1g4187 236 MobiDBLite consensus disorder prediction 133 159 - -
Lja1g4187 236 Gene3D - 35 87 - -
Lja1g4187 236 Pfam Myb-like DNA-binding domain 90 132 IPR001005 -
Lja1g4187 236 Pfam Myb-like DNA-binding domain 36 82 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4187 Lja-Chr1 53380583 53381643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4187 28 137 MYB Transcription Factor Family AT4G37260 76.786 8.48e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja1g4187 Myb_DNA-binding 9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4187 - - lja:Lj5g3v0065670.1 337.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4187 1 53380583 53381643 Lja1g4187 1 53380583 53381643 ECH