Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4185 ATGGTGCTTATTGGTGCTGAGGGTGTCAAAATACAAGCTTCTATCTGTAAGAGACACCCAATAAGGAATCAGATTGCTGAAGGAGCTGTGTACAAGATATCAAATTTCAGGATCTTCCCTAATGATGGAGTGCTGCGTTTCACCGGGCATAGCTGCAGGCTTTTTTTTCATGGATGCACAAAGATGGTTCGAACCACTGAGGATGGTGTTATTCCTTTAAACTGCTGGTCCTTCTTTGATACACGCCATATTAAAATTATCAGGGATACCTTCACAGAAGTAATAGATTTTGTTGGACTGGTCATTGCTGCATCAGAGGAGAAGGTTTACATCAGGAATTCAAAAATTACTAAGAGGATGGTGATTCAACTCCAGGACCTTAGGGGAAATATCCATTGTGTGCTTGAAGGAGAACATGTGGAAACATTTTTGGAGTATTTGTCTTCAAACTGGACAGAAAAACCTATGATGGTTATACAGTTTGTCAAAGTTTTCACCCACAGAGGGAGACTATTCATTGATTGCATACCACCTGCAACCAAAATGTACATTGAGCCTGTTATTGAGGAATCAGTTGTGCTAGCTGGAAGGTTGGCAGAAGCTGGATTTCAAAATGGCCCTGTTGAGTTTATAAGTCGTGATATTGCGTATGCGAATCTTAATGCTGACGTGCTGAAGTTCTACCCAAGGAGAACAATTTCTGAGCTTTTAGTGGAGAAAGAGCAAGGTGTATTTCTTGTTCATGCTGTTGTTGTTGCGGTCTTAAAGGGTGGTTATTGGTGTTATCCTTCTTGTAGATGCCACAATGAGTTGAATTTACGTAATGATGCGTTTGAATGTTCAAAGTGTTCTATGATCTTTGAGAAGATGATTCATAGGTACCGTGTTAAGATTGAAGTTTTTGATGCTTCCGATAGTGCTGTTTTTGTTCTCTTTGAGAGGGAAGTACAACAATTGATTAGTGTGTCATGTGAAGATTTAGTCAGTAACATTAAGGTGGATGATGATTCTAATGTTGTCTATCCACAAGAATTTGAAGATCGCATACCTGGAAAAGAGCTTATTTTTAAAATACGTAATGATGGTGGAATTACATATAATGGAGCTGAATGTTACCATGTCCTTGCCATTACTGAGGATCCTGAAGCAATTTCCTTATTTCATGCATTACAATCTAATGATTCAACTGCCAATGCACAATTTGGGACCAATACCACTGGTGTTGAAAACAATGAAGAGCTGGAAGACAAGGAAGTTGGTGGTTTTTCCTATAATACACCATTTGAAGATGTGCCTGAAAGTAGCACTGGATCTTTACTTCCCAAACCATTGAAGAGGAAATTGGTGTTGGACTTTGATGATGAATCTGAGGAGGATGGTAATAATGTCCAAGTTGTGGAAGGTTTCCTGAATGAGAAGAATTCATCTAACTTGGTGCTTTCTGCTGACGAAGACAACATTAGGGTGGAAGTGGATGAGGACAAAAGTATTGATGATGCAGATGATGACTTTGAATGTACTATGATGGAAATTGCTGAGGAAGATGAGTTAGATGATGAAGCTGAATTGGAGGATGATCTTGCATATGTTGACTGA 1596 0.3916 MVLIGAEGVKIQASICKRHPIRNQIAEGAVYKISNFRIFPNDGVLRFTGHSCRLFFHGCTKMVRTTEDGVIPLNCWSFFDTRHIKIIRDTFTEVIDFVGLVIAASEEKVYIRNSKITKRMVIQLQDLRGNIHCVLEGEHVETFLEYLSSNWTEKPMMVIQFVKVFTHRGRLFIDCIPPATKMYIEPVIEESVVLAGRLAEAGFQNGPVEFISRDIAYANLNADVLKFYPRRTISELLVEKEQGVFLVHAVVVAVLKGGYWCYPSCRCHNELNLRNDAFECSKCSMIFEKMIHRYRVKIEVFDASDSAVFVLFEREVQQLISVSCEDLVSNIKVDDDSNVVYPQEFEDRIPGKELIFKIRNDGGITYNGAECYHVLAITEDPEAISLFHALQSNDSTANAQFGTNTTGVENNEELEDKEVGGFSYNTPFEDVPESSTGSLLPKPLKRKLVLDFDDESEEDGNNVQVVEGFLNEKNSSNLVLSADEDNIRVEVDEDKSIDDADDDFECTMMEIAEEDELDDEAELEDDLAYVD* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4185 531 PANTHER BNAC07G49340D PROTEIN 4 390 - -
Lja1g4185 531 CDD RPA1_DBD_C 260 359 IPR013955 -
Lja1g4185 531 Gene3D - 221 379 IPR012340 -
Lja1g4185 531 CDD RPA1_DBD_B_like 96 190 - -
Lja1g4185 531 Pfam Replication factor-A C terminal domain 247 359 IPR013955 -
Lja1g4185 531 Gene3D - 71 205 IPR012340 -
Lja1g4185 531 SUPERFAMILY Nucleic acid-binding proteins 227 363 IPR012340 -
Lja1g4185 531 PANTHER REPLICATION FACTOR A 1, RFA1 4 390 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4185 Lja-Chr1 53341034 53351746 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4185 67 327 Core DNA Replication Machinery Family AT4G19130 20.939 1.57e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4185 - - lja:Lj4g3v0472980.3 269.626