Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4176 ATGATGCTATATAGTACCATAAAGGCTAGGAATGGGGGTGGTGACTGGATCCCGGTGGTGAACGGAAAACGCCGGTTCACCCCTTCCCGGAGGTTGGATCCAGGTACAGCCAAGGCTAGGAATGGAAGAGAGTCTAGAAAACAAGCCATGGAATCAGTATTGCCTGCACTTGACACAACGACATTATTCCTTGATGGGTTACCTGATCAAACCTCCTACTCCAATATCAAGGAGTGTTTCTCCAGGTATGGAATTGTGAAAGGTGCTTTCGTTCAGAGAGAGCGTAAACAGAACCGGAGAACTAAATTTGGATTTGTGAGATTTGCAAACAAGGGTGATGCGATCGAGGCAATCATTTGCATGAATAAGAACTGGTTCTTGGGGTCTCGTATAAGGGTCACCGTGGCCAGACATCCCCCAAAGAATACGCACACCTCTAGTTCACAGAACAAGGTCAGGGTTCGAGGGAAGAAGAAAGCTTGGGTACGTAAATCCCCCGACGTCTTAGGACATAGAACCAGAAACTCTCGTTATGAGTTTCTCTATAGCCCAAACGAGGAAGATCAGAAGTGGGTGAATAAGCAAGCGATTGCTTCCTTAAGAGACTGCTGCAGAGCAGAGGACGTGCATCGGTGTCTAAGGGATAAGGGATGGAGAACCAAGGTACGATCCATGGGGCCAAAGGAGGTAGCCATAGAATTTGAGGATGCAGAGAAAAGGGATGCCTTTCTGGACAGGGACGCTGCTGCTTTGAGAGAGGTGTGTGAAGTAATCTCCCCGGGGAAGATGCTCTCTGTGGCAACCAGGCACTTCCACTGGGTCAAGCTATTGAGAGTCCCGCTGGTGGCTTGGAGCAGGGCTTTCTTTGCCAAGGTTGTCGGAGTGATGGGCAGTCTTGTGAGCCTCGACCCTGCCACTGAAGAACGCAGACACTTAGAATACGCCCGTATGTTGATCTCATCCTCTATCCCGACATTGGAGAGCAGCTTCGTTGATGTTAACATTGATGGGACAATTTTCAAAATCTGGGTGGAAGTGGAAGCAGGCAGCGGTGATAATCTACCTGCGACTCACCTGGAACCAGAGGAAAGCTTGGAATCCAGCGTAGCCCATGGTGGATCAACGCCGTGCTCAGGGACGATGGTTCAAGAAACACCGTTAACGGAAAGAGGTGCCTCCTCCGAGGGTTGCGATGTGGTGGAGATAATTTCCGGTGCACGGTGCCCGGTGGTCACGTGTGTAGAGGAAGCAGACGAAATTCTGAGTGGGCAGAGCAAGATTCTAACAGTTCACAGAGGGGAGCCACCAACAGTACCTTACCTGGGTAATTATTTGAATTATCCCCTAGTCTTGAGGGAAAGAGAGGCAGACTGTGCCTACAATCAGGGAGTAGAGCTATGCGTTGGGGGAAGCATCATTGCTAGGTTCCCCAATTTTGTGCTTTCCTCAGACCTGTGCAATTGGCTCGAGGAAGTCAACTTTACATGTCTACTCCAAAACCTAAGACAGGATCATAGTCTCCTCAGGCTACAATCGCACCTTTCGTTGGGTGGGTCCCTCTCCTGTAGTGTTTTATCATCTGGGCCACTTGGGAATGGACTTACGGTTGAGCGGCCCATGGAAAATTTCTCCCTCTTTGTTGACCTGGGTCGGGTTCAAGTGGTAAACAGGGACTTCCATATGGATGACAAACCAGTGGTCCCCTTTCGTCCAACAGAAACGGTGAGCCAAAATATTATTTTATCTTTGCAAAAGGAAACAGAATCAGATCAATTATCCTTTAGTTCTTCATCTAGGAACTCGCATGTTATCCTAAAACGCAATCTTCACCGTGTTGTGCGTTCCAAATCGCAACCAAGGTTTTCCACAGAGAATCCTGGTTTGGGAGGAGGTGAAGCACTGCTGCCAGTTTCTTCCTCTGCCGGTGATCAGGTAACAAGTGGGCAATATACTTCGGAGCTTTCTCATCCTCATCCGAGTGAGGAATCACCCACAACCGTTAAAGCTCGTCAAGCTTATGAAATAGGGAAGGTTGTTGGTGTGGTATTCTGTTGCTCAGAGGCTGAAGCTATTGAGGGTTTTGCCAAACAAATCTCCAACCGCAGAGCTTCTTGA 2115 0.4879 MMLYSTIKARNGGGDWIPVVNGKRRFTPSRRLDPGTAKARNGRESRKQAMESVLPALDTTTLFLDGLPDQTSYSNIKECFSRYGIVKGAFVQRERKQNRRTKFGFVRFANKGDAIEAIICMNKNWFLGSRIRVTVARHPPKNTHTSSSQNKVRVRGKKKAWVRKSPDVLGHRTRNSRYEFLYSPNEEDQKWVNKQAIASLRDCCRAEDVHRCLRDKGWRTKVRSMGPKEVAIEFEDAEKRDAFLDRDAAALREVCEVISPGKMLSVATRHFHWVKLLRVPLVAWSRAFFAKVVGVMGSLVSLDPATEERRHLEYARMLISSSIPTLESSFVDVNIDGTIFKIWVEVEAGSGDNLPATHLEPEESLESSVAHGGSTPCSGTMVQETPLTERGASSEGCDVVEIISGARCPVVTCVEEADEILSGQSKILTVHRGEPPTVPYLGNYLNYPLVLREREADCAYNQGVELCVGGSIIARFPNFVLSSDLCNWLEEVNFTCLLQNLRQDHSLLRLQSHLSLGGSLSCSVLSSGPLGNGLTVERPMENFSLFVDLGRVQVVNRDFHMDDKPVVPFRPTETVSQNIILSLQKETESDQLSFSSSSRNSHVILKRNLHRVVRSKSQPRFSTENPGLGGGEALLPVSSSAGDQVTSGQYTSELSHPHPSEESPTTVKARQAYEIGKVVGVVFCCSEAEAIEGFAKQISNRRAS* 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4176 704 PANTHER RNA-BINDING MOTIF PROTEIN 14B 37 219 - -
Lja1g4176 704 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 62 132 IPR000504 GO:0003723
Lja1g4176 704 Gene3D - 33 170 IPR012677 -
Lja1g4176 704 MobiDBLite consensus disorder prediction 27 47 - -
Lja1g4176 704 MobiDBLite consensus disorder prediction 354 377 - -
Lja1g4176 704 MobiDBLite consensus disorder prediction 639 666 - -
Lja1g4176 704 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 138 IPR000504 GO:0003723
Lja1g4176 704 SUPERFAMILY RNA-binding domain, RBD 44 146 IPR035979 GO:0003676
Lja1g4176 704 MobiDBLite consensus disorder prediction 615 666 - -
Lja1g4176 704 Pfam Domain of unknown function (DUF4283) 269 319 IPR025558 -
Lja1g4176 704 SMART rrm1_1 61 134 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4176 Lja-Chr1 53160686 53163555 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4176 46 128 Eukaryotic Initiation Factors Gene Family AT2G23350 31.461 2.94e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4176 - K12891 lja:Lj1g3v1648920.1 1362.44