Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4170 ATGGTGGCGAAATACGAAGAGTCTCGCCGGAAAAGATTGGAGGAGAACAAGAAGAGGATGGAGGCTCTCAACCTCCCTCAGCTCTCTCAAGCTCTTCGCAACTCCCCTTCTCCCAAACCCTCTCCACTGAAGCAAGTGAAATCTCGCACCATCCAGAAAGACCTCGTTGTGGTGAGGAGGTCCGGCCGTGTCGCCAACATGCCCGCTCCTGTTTACAAAGAAATTCTTATTGATAGCGTGAAGATACCTCGAATTAGAAGGGCTTATACGAATACGAGTAAGTACAGGGATTATTCGAATCGGGTGTATGCGTCGATGGAAGACAGAGAGGAAGCTATGGAGAAAGCTGATAAGTTACTTGAGGATTTAGGTTCTGATCATCCAGCTTTCATCAAGTCAATGCTCCAGTCCCATGTCACTGGTGGATTCTGGCTGGGACTTCCATGCCATTTCTGCATTGACAACCTTCCTAAACAGGATGAAATGATTACTTTGATTGATGAGGATGGGGATGAGTATCCAACAGTATATTTGGCTCGCAAAAAAGGACTCAGTGGTGGATGGAGAGGCTTTGCGATTGCTCATGACCTAGCTGACGGGGACGCTTTGATTTTTCAATTAACTAATCGCAGTACATTCAAGGTCTACATTATTAGAGTGGACAGCCCTTCAGAGGATACAGCTTAA 687 0.4643 MVAKYEESRRKRLEENKKRMEALNLPQLSQALRNSPSPKPSPLKQVKSRTIQKDLVVVRRSGRVANMPAPVYKEILIDSVKIPRIRRAYTNTSKYRDYSNRVYASMEDREEAMEKADKLLEDLGSDHPAFIKSMLQSHVTGGFWLGLPCHFCIDNLPKQDEMITLIDEDGDEYPTVYLARKKGLSGGWRGFAIAHDLADGDALIFQLTNRSTFKVYIIRVDSPSEDTA* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4170 228 ProSiteProfiles B3 DNA-binding domain profile. 130 221 IPR003340 GO:0003677
Lja1g4170 228 MobiDBLite consensus disorder prediction 1 47 - -
Lja1g4170 228 Coils Coil 106 126 - -
Lja1g4170 228 MobiDBLite consensus disorder prediction 27 47 - -
Lja1g4170 228 SUPERFAMILY DNA-binding pseudobarrel domain 124 220 IPR015300 -
Lja1g4170 228 CDD B3_DNA 128 219 IPR003340 GO:0003677
Lja1g4170 228 Gene3D - 105 222 IPR015300 -
Lja1g4170 228 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 3 222 IPR044837 -
Lja1g4170 228 Coils Coil 3 23 - -
Lja1g4170 228 MobiDBLite consensus disorder prediction 1 21 - -
Lja1g4170 228 SMART B3_2 130 221 IPR003340 GO:0003677
Lja1g4170 228 PANTHER B3 DOMAIN-CONTAINING PROTEIN 3 222 - -
Lja1g4170 228 Pfam B3 DNA binding domain 130 219 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4170 Lja-Chr1 53098028 53103252 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4170 5 221 B3 DNA Binding Superfamily AT3G19184 52.036 2.17e-63 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lja1g4170 B3 6.3e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4170 - - gmx:100797091 332.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4170 1 53098028 53103252 Lja1g4170 1 53098028 53103252 ECH