Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4169 ATGCCCACTCCTGTTTACAAAGAAGTGTCTGTTGATACTGGGAAAATGCCTCGAATTCGAAGAGCTTACAATAAGCATAGGGATTATTCGAATCGGGTGTATGCTTCAGATGAAGACAGGGAGGAAGCCTTTGAGAGAGCAGAAAAGTTACTTGAGGATTTAGGATCTGAATTTCCTGCCTTCACCAAGCCAATGCTTCAGTCCCACGTCAGCGGGGGATTCTGGCTGGGCCTTCCAGTCCATTTCTGCAGGAAGAACCTACCTAAACAGGACGGAGTGATCACTTTGATTGATGAGGATGGTGATGAGTATTCAACAATATATTTGCCTCGAAAAACAGGACTAAGTGGTGGATGGAAAGGTTTTGCAGTTGCTCATGACCTAGCAGACGGGGACGCTTTAGTTTTTCAATTAATCAAACGCACTGCATTCAAGGTCTATATTATTAGAGTGAACAGTCCTCCAGAGGGTACCACAGCTTAA 483 0.4451 MPTPVYKEVSVDTGKMPRIRRAYNKHRDYSNRVYASDEDREEAFERAEKLLEDLGSEFPAFTKPMLQSHVSGGFWLGLPVHFCRKNLPKQDGVITLIDEDGDEYSTIYLPRKTGLSGGWKGFAVAHDLADGDALVFQLIKRTAFKVYIIRVNSPPEGTTA* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4169 160 Gene3D - 35 153 IPR015300 -
Lja1g4169 160 ProSiteProfiles B3 DNA-binding domain profile. 61 152 IPR003340 GO:0003677
Lja1g4169 160 SMART B3_2 61 152 IPR003340 GO:0003677
Lja1g4169 160 Pfam B3 DNA binding domain 61 150 IPR003340 GO:0003677
Lja1g4169 160 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 19 155 IPR044837 -
Lja1g4169 160 SUPERFAMILY DNA-binding pseudobarrel domain 55 152 IPR015300 -
Lja1g4169 160 CDD B3_DNA 59 150 IPR003340 GO:0003677
Lja1g4169 160 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS03G0184500 19 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4169 Lja-Chr1 53092060 53096255 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4169 3 158 B3 DNA Binding Superfamily AT5G42700 62.821 1.09e-67 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lja1g4169 B3 6e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4169 - - gmx:100797091 240.35