Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4162 ATGGCCGCAGCAATAGCAAGAAGCTACTCTTTTCAGCCACGCTCTTTATTCAACAGTAACACCATCTATAATCCTTCACCATATGGAGGATACTCATGGCTGGGACCTGCTGCTTCGAGAGCAGGAACCACTCCACGTTGTAGGCAAATTTGCGCAGCAATGCAACCGCGACCGACATGGCTCCCAGGACTCGATCCCCCAGCTTATCTTGATGGAACTCTTGCCGGAGATTACGGGTTCGACCCACTTGGGCTTGGAGAGGATCCTGAAAGCTTAAGGTGGTATGTGCAGGCAGAACTGGTTCATGCTCGCTTTGCAATGCTTGGGGTATTCGGAATTCTAGTAACAGATCTACTTCGCGTCACAGGGCTTAGTAAGATACCTGTTTGGTTTGAAGCCGGTGCAGTAAAATACGAATTTACCAACACACAGACGCTGATCATTGTTCAACTACTCTTGATGGGGTTTGCCGAAACCAAAAGGTACATGGATTTCATTAGTCCGGGATCTCAAGCCAAAGAGGGGTCCTTCTTTGGATTGGAAGCTTCATTTGAAGGCTTAGAGCCAGGGTACCCTGGGGGTCCTCTGCTAAATCCTCTTGGCCTAGCTAAAGACATTAAAAATGCTCGTGAGTCGAAGCTTAAAGAAATCAAGAACGGGCGTCTGGCAATGGTGGCAATTCTTGGCATCTTTGTACAAGCTTCTGTGACTCATGTTGGACCAATTGATAACCTTGTGGAGCACCTCTCCAATCCATGGCATAAAACTGTTATTCAAACCCTTGCAAGTTCTGGTTCTTAG 801 0.4744 MAAAIARSYSFQPRSLFNSNTIYNPSPYGGYSWLGPAASRAGTTPRCRQICAAMQPRPTWLPGLDPPAYLDGTLAGDYGFDPLGLGEDPESLRWYVQAELVHARFAMLGVFGILVTDLLRVTGLSKIPVWFEAGAVKYEFTNTQTLIIVQLLLMGFAETKRYMDFISPGSQAKEGSFFGLEASFEGLEPGYPGGPLLNPLGLAKDIKNARESKLKEIKNGRLAMVAILGIFVQASVTHVGPIDNLVEHLSNPWHKTVIQTLASSGS* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4162 266 Pfam Chlorophyll A-B binding protein 66 234 IPR022796 -
Lja1g4162 266 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 34 263 IPR001344 GO:0009765|GO:0016020
Lja1g4162 266 PANTHER PHOTOSYSTEM I CHLOROPHYLL A/B-BINDING PROTEIN 5, CHLOROPLASTIC 34 263 - -
Lja1g4162 266 SUPERFAMILY Chlorophyll a-b binding protein 52 263 - -
Lja1g4162 266 Gene3D Chlorophyll a/b binding protein domain 59 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4162 Lja-Chr1 53037441 53039299 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4162 36 258 Chloroplast and Mitochondria Gene Families AT3G61470 46.429 4.58e-63 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4162 K08911 - gmx:100804934 411.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4162 1 53037441 53039299 Lja1g4162 1 53037441 53039299 ECH