Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4153 ATGGACTCTTTTGACCAGTTAAAATCTTCCCCATCATCAGAGGATTTCATGATGATGATGCAATTCCCTGAATTCTCAGCAGCTTACGGCGCCGACGCAATTCCACCGCCAGAGGAGCCAGCTGGCGCTGTTAGTACCATGCCACTATCATTTACACACTTACCGTCCTCCACAATCTCTTTCACTAACAATAACCCAACCCCAACATTGCTTCAACACCGTAGCAGCAACACCGCCACAACTTGCTTGTCAAACAGTACTAGTTGTGGCGGTGCTGATACTACGGTGTCCTTTGAGAAGCGGAACACGATGGTGGCGATGAGGGAGATGATATTCAGGGTGGCGGCGATGCAGCCAATACACATGGTAGACCCTGAGTCAGTGAAGCCGCCGAAGCGGAGGAACGTGAGGATTTCAAAGGACCCTCAAAGCGTGGCGGCGAGGCACCGGAGAGAGAGGATAAGCGAGAAGATAAGGATACTGCAGAGGTTGGTCCCCGGAGGAACCAAGATGGACACTGCTTCCATGTTGGATGAGGCAATTCACTATGTCAAGTTTCTCAAGACACAGATTCAGTCACTTGAACGTGCTGCTTCAAGTAACAATGCAGGGATAGGGTTCCCTGTTCCAATGTCTAGTAGGAGTGTTATCCCTAATTATCTTAATCCTCTTGCTAGGCCTTACCAGGCTCGAAATGTTGAGCATGAGAGATATGATTAA 720 0.4903 MDSFDQLKSSPSSEDFMMMMQFPEFSAAYGADAIPPPEEPAGAVSTMPLSFTHLPSSTISFTNNNPTPTLLQHRSSNTATTCLSNSTSCGGADTTVSFEKRNTMVAMREMIFRVAAMQPIHMVDPESVKPPKRRNVRISKDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQIQSLERAASSNNAGIGFPVPMSSRSVIPNYLNPLARPYQARNVEHERYD* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4153 239 Pfam Helix-loop-helix DNA-binding domain 148 187 IPR011598 GO:0046983
Lja1g4153 239 Gene3D - 137 204 IPR036638 GO:0046983
Lja1g4153 239 PANTHER BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN 4 232 - -
Lja1g4153 239 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 142 202 IPR036638 GO:0046983
Lja1g4153 239 Coils Coil 177 197 - -
Lja1g4153 239 CDD bHLH_AtIND_like 139 195 - -
Lja1g4153 239 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 138 187 IPR011598 GO:0046983
Lja1g4153 239 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 4 232 IPR045843 GO:0003700|GO:0006355
Lja1g4153 239 SMART finulus 144 193 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4153 Lja-Chr1 52956607 52957326 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4153 103 205 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 83.495 2.49e-47 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja1g4153 HLH 1.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4153 - - gmx:100815041 249.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4153 1 52956607 52957326 Lja1g4153 1 52956607 52957326 ECH