Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4151 ATGGCTCTTCTCCTAGACAACTGCGAAGGCATTCTCCTCTCCCTAGACTCCCACAAATCAGTCCCCGCTCCCTTCCTCACCAAAACCTACCAGCTCGTCGACGACCCCGCCACCGATCACATTGTCTCCTGGGGCGAAGACGACACCACCTTCATCGTCTGGCGGCCACCGGAGTTCGCCAGAGACCTCCTCCCTAACTACTTCAAGCACAACAACTTCTCCAGCTTTGTCCGCCAACTCAACACATATGGTTTCAGGAAAATCGTTCCAGATAGATGGGAGTTTGCTAACGAGTTCTTCAAGAAAGGAGAGAAGCATTTACTCTGCGAGATCCACCGCAGAAAAACCGCTCAACCCAACCAAACCGGCATCAACCACCACCACCACGGTGGTTTCTTCCCGTTTTCAAGTAGAGCAAGCATCTCTCCAGATTCTGAGGATTTACAACAGCAAACCAACTGGTGCGACTCTCCGCCGCCGCTCATCACTTCTTCTTCCCCCAAAGGCGTCTCCGCCGCCACGGCAGCGGCGGCGATGATGATGAACAGCGGAGCCAGCTACGGCACTTCTGTCACTGCGCTTTCTGAAGATAATGAAAGACTCAGGCGAAGCAACAACATGCTCATGTCCGAGCTCGCTCACATGAAGAAGCTTTACAATGATATCATCTACTTCGTTCAGAATCATGTGAAGCCGGTGGCACCAAGTAACTCTTATTCTTCTTCTTCTATGCTTCTCTGCAACACAGTAGCATCATCAACCCCTATTCCTAGCAATGTTCCATTGATGCAGAGGCCAATGAATCAGGTTATGGGGTATTATTCTACTAACCCTAAGCAAGTTTCTCATAATCACCACCACCACCATCAACCTCAAAATCAAACCAATGTTGTTGTGAACTCTCCAACCAACACATCAAGAAGCTCCATAACCGTTTCTGGAGAGGCTAATAATAACAACAGTAGCAACAACACCTGCAAGACTAAGCTTTTTGGGGTCTCTTTACAGTCCAAGAAAAGAGTGCACCCTGATTCAGACACCAACAAGCTAGCTCGCTTGGTTTTGGAAAAAGATGATCTAGGCTTAAATCTCATGCCTCGTTCCACTTGTTAG 1113 0.487 MALLLDNCEGILLSLDSHKSVPAPFLTKTYQLVDDPATDHIVSWGEDDTTFIVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTAQPNQTGINHHHHGGFFPFSSRASISPDSEDLQQQTNWCDSPPPLITSSSPKGVSAATAAAAMMMNSGASYGTSVTALSEDNERLRRSNNMLMSELAHMKKLYNDIIYFVQNHVKPVAPSNSYSSSSMLLCNTVASSTPIPSNVPLMQRPMNQVMGYYSTNPKQVSHNHHHHHQPQNQTNVVVNSPTNTSRSSITVSGEANNNNSSNNTCKTKLFGVSLQSKKRVHPDSDTNKLARLVLEKDDLGLNLMPRSTC* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4151 370 Gene3D - 17 116 IPR036388 -
Lja1g4151 370 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 12 239 IPR027725 -
Lja1g4151 370 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 297 369 IPR027725 -
Lja1g4151 370 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Lja1g4151 370 MobiDBLite consensus disorder prediction 291 323 - -
Lja1g4151 370 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja1g4151 370 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja1g4151 370 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja1g4151 370 Coils Coil 191 211 - -
Lja1g4151 370 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja1g4151 370 PANTHER BNAC06G00310D PROTEIN 12 239 - -
Lja1g4151 370 PANTHER BNAC06G00310D PROTEIN 297 369 - -
Lja1g4151 370 MobiDBLite consensus disorder prediction 276 323 - -
Lja1g4151 370 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja1g4151 370 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4151 Lja-Chr1 52917040 52918244 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4151 1 369 HSF AT1G46264 54.061 1.73e-123 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lja1g4151 HSF_DNA-bind 3.9e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4151 K09419 - gmx:100781389 519.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4151 1 52917040 52918244 Lja1g4151 1 52917040 52918244 ECH