Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4150 ATGCAAGGGCAGAGCGGTACAATTGATTCCTTAGCTGAAATGTTAGAGCTAGAATTTGAATGTGGACCAACACCAAGTAATACTACTGCGGATCAGCATACATATTGGAATAATATGCGGAATCCGACAGAAAATCAAATACCTGATTATATACTTTCTCCTAGTGACATAAGCCCATCTCATGTGAATTCAATAAATCATGAATGGCAAAATTTGAGTGGATGGAGCTTAGGCGAGCCAAGTTCCAGTAATACACAGAATGAAATAGATGATAATGAACAGAAAAGAGAACTTGGATGGTCATCATCCATTAGTGCTGGTGCATTAGCTGGTCCAAGACTTGAAGATCGGCGCCTTGATCCAAGCAATGCTCTTTCGCTGGATGATGTCAACACCGGTCCTGTGTATGACCGCAGCTCCAATTCTCATTTGATGTCCCAGAATCTCAACTTAAATGAAGGTTTAGCGGACAGTGGCAGTGATAATAGTCCACATCGGGGTCACCCTAACGTACACAAGTCCAGTGAATCAGTAAATGAGTGTATTCAGCCTAATAATGGTTCTGATTCTTTTCTTCTTCCTTCTGGGAATAATGGCTTTCTAGTAGAAGATACTGATGGTAGGCCAAGTTCTTCTTTGGACACTCGACGCATGTCTTGTAAAAGAAAAGCTGTTGAAGGAAATTCGAGGCAATCTTCAGATGGTGGAGGTTCTAGCTATAGTCAGCACATAGATGGTAGTGCTTGGCACACCTTTCCTACTCAGGATCATGCTGGAAGCAGTTCAAGCAGATCTATTTCCTCAGAACATTTAAATGCAAGACTTGGCCTGGGTGTGGGGGATGAAGCCTCTGAAAGTGTTCCTGATTCAGACGTTGCAGGAAGCTCAGAAAGCTTCCACAGGAACTTCCGTTTGAGGGTAAATCCTTCAAACCAACAAAATTCTGTTCCTCCCTCCGCATTCTCAACTGGGAGCATAGGTAGGCATTCTGGTGTTTCTTCATCCTCTCAAGTGCCACAAAGGTTTCATCCTGCTGATGAATCTCTGAACTTGAGGTCACCACCACTAATAGATAATGTAACTCCTCAAAGCCAGCCCCTTGTAATCCATGCTCCTTCTTTGCCAAGGAATCGTCAATCATTTAGATGGAGTGGTGGTTCTAACTCAAGAAACATCCATTCATCAAACTCTTTTAGATGTGCAGACAGGGATAATCAATCGCTGGAGGCTGCAAGCTCAAGAAGTGTGTCTAGAAATATTTTAGAACACCCAGTTTTTGGACCATCAGCTGATTTAAGAAATTTGATTCAAAACCCGACAATTACGGCTTCAAGTTCAAGTAGTGCAAATTTAAGTGTTCCTGGAAATGTTGCTTCTTCATCAAGGACTGGATCGAATTTAGCTACCAATCTCTCATCTACCTCAACTTGGGGATCTCGTCCTAATCCTCCGCAGCATCCCCGGAGGTTATCTGAATATGCTCGACGGTCCTTGTTTTCTTCTGGTTCCGATGCTACTGGAGGTCCAAGCAATAATTATTCCTCCTTGCGCACTGGTCCGTCTACAACTGAATCAAGGGTTTTATCATCTGGGGCTCACCCAAGATCATCTTCATGGTTGGAGAGGCAAGGAGATAGTGACTTTGGATTTCCTTATTCACTACGTTCTTTAGCTGTTGCTGGTGAAGGAAGTAGTAGACTTGTATCTGAGCTCCGCAATGTCTTGGGCCTTATGCGTCGGGGAGGAAACCTGCGATTTGAGGATGTTATGGTCCTTGATCAATCAGTGTTTTCTGGAATCGCTGATATTCATGATCGTCATAGGGATATGCGACTTGATGTTGATAACATGTCTTATGAGGAGCTTTTGGCTCTGGAAGAGCGCATTGGAAACGTGAGTACTGGGTTGAGCGAGGAAATGATATTGAAACTTATAAAACAGAAAAAGCATTCAGTTGAAACAGGATCTCAATTTGATGCAGAACCCTGTTGTGTTTGTCAGGAGGACTACAATGATGGAGATGATATTGGAACACTTGATTGCGGCCATGATTTCCATAGCTACTGTATTAAACAGTGGCTTATGCATAAGAATCTGTGTCCCATTTGTAAGACAACAGGCTTGTCAACATGA 2133 0.4294 MQGQSGTIDSLAEMLELEFECGPTPSNTTADQHTYWNNMRNPTENQIPDYILSPSDISPSHVNSINHEWQNLSGWSLGEPSSSNTQNEIDDNEQKRELGWSSSISAGALAGPRLEDRRLDPSNALSLDDVNTGPVYDRSSNSHLMSQNLNLNEGLADSGSDNSPHRGHPNVHKSSESVNECIQPNNGSDSFLLPSGNNGFLVEDTDGRPSSSLDTRRMSCKRKAVEGNSRQSSDGGGSSYSQHIDGSAWHTFPTQDHAGSSSSRSISSEHLNARLGLGVGDEASESVPDSDVAGSSESFHRNFRLRVNPSNQQNSVPPSAFSTGSIGRHSGVSSSSQVPQRFHPADESLNLRSPPLIDNVTPQSQPLVIHAPSLPRNRQSFRWSGGSNSRNIHSSNSFRCADRDNQSLEAASSRSVSRNILEHPVFGPSADLRNLIQNPTITASSSSSANLSVPGNVASSSRTGSNLATNLSSTSTWGSRPNPPQHPRRLSEYARRSLFSSGSDATGGPSNNYSSLRTGPSTTESRVLSSGAHPRSSSWLERQGDSDFGFPYSLRSLAVAGEGSSRLVSELRNVLGLMRRGGNLRFEDVMVLDQSVFSGIADIHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEEMILKLIKQKKHSVETGSQFDAEPCCVCQEDYNDGDDIGTLDCGHDFHSYCIKQWLMHKNLCPICKTTGLST* 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4150 710 MobiDBLite consensus disorder prediction 496 540 - -
Lja1g4150 710 MobiDBLite consensus disorder prediction 443 482 - -
Lja1g4150 710 MobiDBLite consensus disorder prediction 379 398 - -
Lja1g4150 710 MobiDBLite consensus disorder prediction 229 267 - -
Lja1g4150 710 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 626 707 IPR013083 -
Lja1g4150 710 SMART ring_2 663 703 IPR001841 -
Lja1g4150 710 MobiDBLite consensus disorder prediction 76 100 - -
Lja1g4150 710 MobiDBLite consensus disorder prediction 152 267 - -
Lja1g4150 710 SUPERFAMILY RING/U-box 662 706 - -
Lja1g4150 710 MobiDBLite consensus disorder prediction 125 142 - -
Lja1g4150 710 MobiDBLite consensus disorder prediction 307 341 - -
Lja1g4150 710 CDD RING-H2_TTC3 662 704 - -
Lja1g4150 710 ProSiteProfiles Zinc finger RING-type profile. 663 704 IPR001841 -
Lja1g4150 710 MobiDBLite consensus disorder prediction 123 142 - -
Lja1g4150 710 MobiDBLite consensus disorder prediction 174 195 - -
Lja1g4150 710 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE ISOFORM X1 6 709 - -
Lja1g4150 710 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 6 709 IPR045191 GO:0061630
Lja1g4150 710 MobiDBLite consensus disorder prediction 209 228 - -
Lja1g4150 710 MobiDBLite consensus disorder prediction 443 540 - -
Lja1g4150 710 Pfam Ring finger domain 663 704 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4150 Lja-Chr1 52853602 52859875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4150 34 710 C3H Transcription Factor Family AT2G15530 33.565 5.81e-78 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4150 - - gmx:100783014 1056.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4150 1 52853602 52859875 Lja1g4150 1 52853602 52859875 ECH