Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4149 ATGAGTACCCCTGCAGTGAAACTCGTTTCTGAATGCTTCATCAAGCCACAGAGCCCAATCGAAGAGTCAAACCAGATATGCTATCTAACACCTTGGGACATAGCTATGTTGTCTGTCCACTACATCCAGAAGGGCCTTCTCTTCAAGAATCCCGAATCCATTGAGAATCAACCAGATTTCATGAACAATCTCTTGGATAACCTCAAACACTCACTTTCTCTTGCCCTTGTCCATTTCTACCCACTTGCTGGTCGCCTTGTAACCCAGAAAACAGAAGATCCTCCATCTTATGCAGTTTTTGTTGATTGCATAAACAGTCCTGGAGCTGGATTCATACATGCAACTCTAGACATGACCATATCTGACATCCTCTTCCCTGTTGATGTCCCACCTGTTGTTCAATCATTCTTTGACCACCACAAAGCAGTCAACCATGACGGTCACACCATGCCGTTGTTGACCATCAAGGTCACTGAATTATTAGATGGTGTTTTCATTGGTTGTTCCATGAATCACTGTGTTGGTGATGGTACTGCTTACTGGAATTTCTTCAATACATGGTCTGAGATCTTTCAAGCAAAAGCTCAAACAGGACATGATGAGTTTCATTATGTTCCCATTTCACACCACCCCATTCACAATCGATGGTTTCCCCCAGGTTGCAATCGACTAATCAACCTTCCCTTCAGACATCATGATGAATTCATAGGCAGGTACGAATCAACCAAATTGAGAGAGAGAATCTTCCATTTTTCAGCAGAGTCTATTGCAAAACTGAAAGCAAAGGCTAACTCAGAATCAAAAAGTAACAAGATCTCTTCATTCCAATCCTTATCAGCATTTGTTTGGAGATCATTGACCCGTGCACGCCATCTACCACATGATCAGAGAACAATTTGCAGGATGGCGGTGAACAACCGAACAAGAATGGAACCGCCTTTGCCTCATGAATACTTCGGAAACTCACTTCATGCAGTTCATGCTGAAGCAAAAGCAGGGGAGGTTCTTGAGAAGGATCTTGGATGGGCAGCATGGAAGCTGCATCTGGCGGTTGCGAACCACGGCGATGCGGCGGTGCAGAAGTATGTTAAAGAGTGGTTGCAGTCTCCGATGGTGTATCGACTTGATCTGTTTCTGGAACCGAATATTGTGATGATGGGTAGTTCACCGAGGTTCAACATGTATGGGAATGAATTTGGAATTGGGAAAGCTGTGGCGGTTAGAAGTGGTTATGCAAACAAGAGTGATGGGAAGGTGACTTCATATCCAGGTAGAGAAGGAGGGGGAAGTGTAGATTTAGAAGTGTGTCTTTTGCCGGAAACAATGGCGGCACTGGAATCAGATGAAGAGTTCATAAGCATAGCTTCAGTGTGCAATCCCCTGTACTAG 1389 0.4435 MSTPAVKLVSECFIKPQSPIEESNQICYLTPWDIAMLSVHYIQKGLLFKNPESIENQPDFMNNLLDNLKHSLSLALVHFYPLAGRLVTQKTEDPPSYAVFVDCINSPGAGFIHATLDMTISDILFPVDVPPVVQSFFDHHKAVNHDGHTMPLLTIKVTELLDGVFIGCSMNHCVGDGTAYWNFFNTWSEIFQAKAQTGHDEFHYVPISHHPIHNRWFPPGCNRLINLPFRHHDEFIGRYESTKLRERIFHFSAESIAKLKAKANSESKSNKISSFQSLSAFVWRSLTRARHLPHDQRTICRMAVNNRTRMEPPLPHEYFGNSLHAVHAEAKAGEVLEKDLGWAAWKLHLAVANHGDAAVQKYVKEWLQSPMVYRLDLFLEPNIVMMGSSPRFNMYGNEFGIGKAVAVRSGYANKSDGKVTSYPGREGGGSVDLEVCLLPETMAALESDEEFISIASVCNPLY* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4149 462 Gene3D - 237 447 IPR023213 -
Lja1g4149 462 Pfam Transferase family 6 451 - -
Lja1g4149 462 Gene3D - 1 227 IPR023213 -
Lja1g4149 462 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 1 455 - -
Lja1g4149 462 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 1 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4149 Lja-Chr1 52768864 52770890 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4149 48 446 Monolignol Biosynthesis Gene Families AT5G48930 26.897 8.08e-31 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4149 - - gmx:100787228 684.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4149 1 52768864 52770890 Lja1g4149 1 52768864 52770890 ECH