Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4148 ATGAGTACCCCTGCAGTGAAACTCGTTTCTGAATGCTTCATCAAGCCACAGAGCCCAATCGAAGAGTCAAACCAGATATGCTATCTAACACCTTGGGACATAGCTATGTTGTCTATGGACTACATACAGAAGGGCCTTCTCTTCAAGAAGCCACAATCCATTGAGAATCAACAAGATTTCATGAACAATCTCTTGGGTAACCTCAAGCAATCTCTTTCTCTTGCCCTTGTCCATTTCTATCCACTTGCTGGTCGCCTTGTAACTCAGAAAACAGAAGACCCTCCCTCTTATGCAGTTTTTGTTGATTGCATAAACAGTCCTGGAGCTGGATTCATACATGCAACTCTAGACATGACCATATCTGACATCCTCTTCCCTGTTGATGTCCCACCTGTTGTTCAATCATTCTTTGACCACCACAAAGCAGTCAACCATGACGGTCACACCATGCCGTTGTTGACCATCAAGGTCACTGAATTATTAGATGGTGTTTTCATTGGTTGTTCCATGAATCACTGTGTTGGTGATGGTACTGCTTACTGGAATTTCTTCAATACATGGTCTGAGATCTTTCAAGCAAAAGCTCAAACAGGGCATGATGAGTTTCATTCTGTTCCCATTTCACACCACCCCATTCACAATCGATGGTTTCCACCAGGTTGCAATCGACTAATCAACCTTCCCTTCAGACATCATGATGAATTCATTGGCAGGTACGAATCAAACAAATTGAGAGAGAGAATCTTCCATTTTTCAGCAGAGTCTATTGCAAAACTGAAAGCAAAGGCGAACTCAGAATCAAGCAGTAACAAGATCTCTTCATTCCAATCCTTATCAGCATTTGTTTGGAGATCATTGACCCGTGCACGCAATCTACCACATGATCAGAGAACAATTTGCAGGATGGCGGTGAACAACCGAACAAGAATGGAACCGCCTCTGCCTCATGAATACTTCGGAAACTCACTTCATGCAGTTCATGCTGAAGCAAAAGCAGGGGAGGTTCTTGAGAAGGATCTTGGATGGGCAGCATGGAAGCTGCATCTGGCGGTTGCTAACCACGGCGATGCGGCGGTGCAGAAGTATGTTAAAGAGTGGTTGCAGTCTCCGGTGGTGTATCGGTTTGATATGTTGGTGGAAGCGAACAGTGTGATGATGAGTAGTTCACCGAGGTTCAACATGTATGGGAATGAATTTGGGATGGGGAAAGCCGTGGCGGTTAGAAGTGGTTATGCGAATAAGAGTGATGGTGGAGTGACGGCGTATCCAGGTAGAGAAGGAGGGGGAAGTGTTGATTTGGAAGTGTGTCTCTTGCCGGAAACAATGGCGGCGCTGGAATCGGATGAGGAGTTCATGAGCATAGCTTCAGCGTGCAATCCTCTGTGCTAG 1389 0.4543 MSTPAVKLVSECFIKPQSPIEESNQICYLTPWDIAMLSMDYIQKGLLFKKPQSIENQQDFMNNLLGNLKQSLSLALVHFYPLAGRLVTQKTEDPPSYAVFVDCINSPGAGFIHATLDMTISDILFPVDVPPVVQSFFDHHKAVNHDGHTMPLLTIKVTELLDGVFIGCSMNHCVGDGTAYWNFFNTWSEIFQAKAQTGHDEFHSVPISHHPIHNRWFPPGCNRLINLPFRHHDEFIGRYESNKLRERIFHFSAESIAKLKAKANSESSSNKISSFQSLSAFVWRSLTRARNLPHDQRTICRMAVNNRTRMEPPLPHEYFGNSLHAVHAEAKAGEVLEKDLGWAAWKLHLAVANHGDAAVQKYVKEWLQSPVVYRFDMLVEANSVMMSSSPRFNMYGNEFGMGKAVAVRSGYANKSDGGVTAYPGREGGGSVDLEVCLLPETMAALESDEEFMSIASACNPLC* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4148 462 Pfam Transferase family 6 452 - -
Lja1g4148 462 Gene3D - 1 227 IPR023213 -
Lja1g4148 462 Gene3D - 237 447 IPR023213 -
Lja1g4148 462 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 1 455 - -
Lja1g4148 462 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 1 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4148 Lja-Chr1 52744058 52745640 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4148 68 446 Monolignol Biosynthesis Gene Families AT5G48930 26.521 2.10e-31 123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4148 1 52744058 52745640 Lja1g4148 1 52744058 52745640 ECH