Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4146 ATGAGTACCGCTCTGTTGAAATTCATATTCAAAGAGGAAGAGAGTGGTTATACCCCGGTTCAGATATCTCATAGGAATTACATCTTTAAGCTTTCTAGAGTCTTCAAACACAATTCTGAACTCATTTGGAAGATGAGTTCCCCTGCAGTTCGAAGCGTTTCAGAATGTTTCATCAAGCCCTTACACCCCACTGAAGAATCAAACCAAATCTGTCACTTAACATCCTGGGATATAAGTATGTTATGCTTTCATTACATCCAGAAGGGTCTCCTGTTCAAGAAGCCAGCACCACCAGAAAACCAACAAGATTTCATTGAGAATCTGCTGAAAAAGCTCAAGCATTCCCTTTCAATTGCCCTCTTCCATTTCTATCCATTGGCTGGTCGCCTTGTTACTCACAAAACTCAAGACCCTCATCACCCCTCATATTCAATTTCTGTTGATTGCAGCAGCAACTATCCCGGAGCTAAATTCATCCATGCAACCTTGGACATGACCATATCCGAAATCCTCTCTCCAGTTGATGTTCCACTCATTGTGCAGTCATTATTTGACCTCAACAGAGCATTGAACCATGATGGTCACACCGTGCCGTTGCTCTCCATCCAAGTCACTGAATTGGTAGATGGCGTTTTCATTGGTTGTTCCATGAACCACAGTATTGTAGATGGCACTTCTTATTGGAATTTCTTCAATACATGGTCTGAGATCTTTCAGGCTCAAGCTCAAATAACACAAGGGCTTCAATGTAAAGATGATGATATTCTAATTTCACACCACCCAATTCACAATCGCTGGTTTCCACAAGGTTGTGATCCACCTATTAACCTTCCCTTCAAACACCACAACGAGTTAATCACTAGATTTGAATCACCAGAGCTCAGAGAGAGAGTCTTCCATTTTTCAGCAGAGTCTATTGCAAAACTGAAAGCAAAGGCCAACTCAGAATCAAACAGCACCAAAATCTCATCATTCCAATCCTTATCGGCACATGTTTGGAGATCCATCACTCGCGCCCGAGGACTAAAACATGATGATGAAACCAATTGCAGGTTAGCCTTAAACAACAGATTAAGAATGGAACCTCCTCTGCCACGAGAGTACTTTGGGAACTCAATCGATATAGTGAATGCAAGGGCAGGTGCAGGGGAATTGCTTGAGAACGGTCTTGGATGGGCTGCGTGGAAGTTGCATCTTGCTGTTGCTAATCATGATGACAGAGCGGTGAGGCAGAAGGTGAAGCAGTGGCTAGAATCTCCTGTTGTGTACCAGCTTGGTCTTCACTTTGAACCTTACAGTGTGACAATGTCGAGTTCACCGAGGTTCAACATGTATGGGAATGAATTTGGAATGGGCAAAGCTGTGGCGGTTCTGAGTGGGTATGCTAATAAGTTTGATGGGAATGTGACTGGATATGAAGGATGTGAAGGAGGAGGAAGCATTGATTTGGCATTGACCATTTCACCTGGAGCAATGAGGGCGCTGGAATTAGACGAGGAGTTCATGCAGGCTGTTTCTGCTCGTTCGCTATGA 1533 0.4364 MSTALLKFIFKEEESGYTPVQISHRNYIFKLSRVFKHNSELIWKMSSPAVRSVSECFIKPLHPTEESNQICHLTSWDISMLCFHYIQKGLLFKKPAPPENQQDFIENLLKKLKHSLSIALFHFYPLAGRLVTHKTQDPHHPSYSISVDCSSNYPGAKFIHATLDMTISEILSPVDVPLIVQSLFDLNRALNHDGHTVPLLSIQVTELVDGVFIGCSMNHSIVDGTSYWNFFNTWSEIFQAQAQITQGLQCKDDDILISHHPIHNRWFPQGCDPPINLPFKHHNELITRFESPELRERVFHFSAESIAKLKAKANSESNSTKISSFQSLSAHVWRSITRARGLKHDDETNCRLALNNRLRMEPPLPREYFGNSIDIVNARAGAGELLENGLGWAAWKLHLAVANHDDRAVRQKVKQWLESPVVYQLGLHFEPYSVTMSSSPRFNMYGNEFGMGKAVAVLSGYANKFDGNVTGYEGCEGGGSIDLALTISPGAMRALELDEEFMQAVSARSL* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4146 510 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 45 505 - -
Lja1g4146 510 Pfam Transferase family 54 502 - -
Lja1g4146 510 Gene3D - 280 497 IPR023213 -
Lja1g4146 510 Gene3D - 45 271 IPR023213 -
Lja1g4146 510 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 45 505 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4146 Lja-Chr1 52727836 52729899 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4146 61 496 Monolignol Biosynthesis Gene Families AT5G48930 28.139 1.59e-35 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4146 - - lja:Lj1g3v1664450.1 1035.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4146 1 52727836 52729899 Lja1g4146 1 52727836 52729899 ECH