Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4145 ATGGCGCAAATTCACGAGACTGACGCGGTGGCTCAGGAGGCGAATCAGCCGATGCCGACGTCTTTGTACGTCGGAGATCTTGACACTGAGATCAACGATTCGCAGCTTTACGATCTCTTCAACCAGATCGGCCAGGTTGTTTCCGTTCGGGTCTGCAGGGACTTGGCCACTCAGCAATCGCTTGGTTATGGCTATGTCAATTTCACTAACCCTAAGGATGCCGCGACGGCGTTGGATGTGCTGAATTTCACTCCGCTGAACGGCAAACCGATTAGGATAATGTACTCTCATCGTGACCCTAGTGTTCGGAAGAGTGGTGCTGCTAATATTTTTGTGAAGAATTTGGATAAGTCAATTGATCATAAAGCTCTATATGATACCTTTTTGGTTTTCGGAAATATTCTGACTTGCAAGATAGCTACGGATGGTTCTGGCCAGTCTAAAGGCTATGGTTTTGTGCAATTTGAGAATGAAGAATCTGCACAAAATGCTATTGACAATTTCAATGGCAAGCTGATTGGTGATAAGGAGGTCTATGTTAGTCATTTCCAACGAAAGCAGGACAGAGAGAATGCTGCTCTCGGTGGCGGGAAGTTTAATAATGTCTATGTGAAAAACCTATCTGAGGCGATGACGGATGATGACTTGAAGAAAATATTTAGTGAATATGGAACTATTACTAGTGCCGTAGTGATGAGAGATGTTGATGGGAAATCGAAATGTTTTGGTTTTGTCAATTTTGAAAATGCAGATGAAGCTGCTAAAGCTGTGGATGCACTTAATGGAAAGAAATTTGATGATAAGGAGTGGTATGTCGGAAAAGCCAAGAAAAAGTCTGAAAGGGAGCTTGAACTGAAAGAACAACATGAGCAGAGTATGCAGGAAACAGTTGACAAATATCAAGGCGCAAACTTGTATCTCAAGAACTTGGATGACAATGTTGATGATGAAAAACTCAGGGAACTGTTCTCTGAGTTTGGTACAATAACTTCTTGCAAGATTATGCGAGATCCACATGGAGTTAGTAGAGGATCTGGATTTGTTGCATTTTCAACTCCTGAGGAAGCAACTCGAGCTCTTGGTGAGATGAATGGTAAAATGGTTGATGGAAAACCTCTTTATGTTGCCCTTGCACAGAAAAAAGAAGAGAGAAGGGCAAAGTTACAGGCACAATTTTCACAAATGAGGCCAGTTACCATGGTCTCTTCTATTGCACCTCATATGCCTATGTACCCTCCAGGAGCTGCTGGGATAGGACAACAATTTTTGTACGGGCAACCACCCATCATACCTCAAGGTGGATATTTCCAGCAGCAACTTCTTCCTGGAATGAGACCAGGTGGTGGTCCATTGTCAAACTTCTATGTTCCACTGGGGCATCAGGGTCAACAAGGTCAGCGCCCAGGTGGACGCCTAGTAGCAGGCCCTATGCAACAACCCCAGCAGCCAGTGCCACTTATGCAGCAACAGATGCACCCAAGGGGACGTGTCTATCGATATCGTCCTGGTCACAACCTGCAAAATGTTCCACTGCCGGGAGCAGCTGGTGGCGTGGGAGTGTCCATTCAGGCCCTGGCTACAGCCCTTGCAGATGCTACTCCTGAAAAGCAGAGGACTATGCTTGGTGAAGTTTTGTACCCGCTAGTAGATAAGCTGGAGCATGATGCAGCAGCAAAGCTCACAGGTATGCTTTTGGAGATGGACCAGACTGAGGTTTTACATCTGATTGAGTCACCAGATGCTCTCAAGGCGAAAGTTGCTGAAGCGATGGATGTGCTGAGGAATGTTGCTCGCCAGCAATCAAACACCCCTATCGATCAACTGGCTTCTCTCTCTCTGAATGACCTGTCTTAG 1854 0.4563 MAQIHETDAVAQEANQPMPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVLNFTPLNGKPIRIMYSHRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQDRENAALGGGKFNNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKCFGFVNFENADEAAKAVDALNGKKFDDKEWYVGKAKKKSERELELKEQHEQSMQETVDKYQGANLYLKNLDDNVDDEKLRELFSEFGTITSCKIMRDPHGVSRGSGFVAFSTPEEATRALGEMNGKMVDGKPLYVALAQKKEERRAKLQAQFSQMRPVTMVSSIAPHMPMYPPGAAGIGQQFLYGQPPIIPQGGYFQQQLLPGMRPGGGPLSNFYVPLGHQGQQGQRPGGRLVAGPMQQPQQPVPLMQQQMHPRGRVYRYRPGHNLQNVPLPGAAGGVGVSIQALATALADATPEKQRTMLGEVLYPLVDKLEHDAAAKLTGMLLEMDQTEVLHLIESPDALKAKVAEAMDVLRNVARQQSNTPIDQLASLSLNDLS* 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4145 617 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 303 380 IPR000504 GO:0003723
Lja1g4145 617 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 521 598 IPR002004 GO:0003723
Lja1g4145 617 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 178 IPR000504 GO:0003723
Lja1g4145 617 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 22 92 IPR000504 GO:0003723
Lja1g4145 617 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 202 270 IPR000504 GO:0003723
Lja1g4145 617 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 305 373 IPR000504 GO:0003723
Lja1g4145 617 Gene3D - 109 194 IPR012677 -
Lja1g4145 617 Gene3D - 516 599 - -
Lja1g4145 617 SMART rrm2_1 304 376 IPR003954 GO:0003676
Lja1g4145 617 SMART rrm2_1 201 273 IPR003954 GO:0003676
Lja1g4145 617 SMART rrm2_1 109 181 IPR003954 GO:0003676
Lja1g4145 617 SMART rrm2_1 21 94 IPR003954 GO:0003676
Lja1g4145 617 Coils Coil 276 296 - -
Lja1g4145 617 SUPERFAMILY RNA-binding domain, RBD 19 189 IPR035979 GO:0003676
Lja1g4145 617 Pfam Poly-adenylate binding protein, unique domain 529 593 IPR002004 GO:0003723
Lja1g4145 617 CDD RRM4_I_PABPs 302 380 - -
Lja1g4145 617 Gene3D - 195 283 IPR012677 -
Lja1g4145 617 Gene3D - 284 394 IPR012677 -
Lja1g4145 617 SMART rrm1_1 109 181 IPR000504 GO:0003723
Lja1g4145 617 SMART rrm1_1 201 273 IPR000504 GO:0003723
Lja1g4145 617 SMART rrm1_1 21 94 IPR000504 GO:0003723
Lja1g4145 617 SMART rrm1_1 304 376 IPR000504 GO:0003723
Lja1g4145 617 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 185 IPR000504 GO:0003723
Lja1g4145 617 SMART poly_2 533 596 IPR002004 GO:0003723
Lja1g4145 617 SUPERFAMILY RNA-binding domain, RBD 297 395 IPR035979 GO:0003676
Lja1g4145 617 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 20 98 IPR000504 GO:0003723
Lja1g4145 617 SUPERFAMILY PABC (PABP) domain 476 611 IPR036053 GO:0003723
Lja1g4145 617 Gene3D - 2 108 IPR012677 -
Lja1g4145 617 CDD RRM3_I_PABPs 199 278 - -
Lja1g4145 617 PANTHER POLYADENYLATE-BINDING PROTEIN 10 603 - -
Lja1g4145 617 SUPERFAMILY RNA-binding domain, RBD 199 282 IPR035979 GO:0003676
Lja1g4145 617 CDD RRM2_I_PABPs 106 182 IPR045305 -
Lja1g4145 617 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 277 IPR000504 GO:0003723
Lja1g4145 617 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 21 594 IPR006515 GO:0003723
Lja1g4145 617 CDD RRM1_I_PABPs 21 100 - -
Lja1g4145 617 PANTHER RNA BINDING PROTEIN 10 603 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4145 Lja-Chr1 52721134 52726391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4145 20 614 Eukaryotic Initiation Factors Gene Family AT4G34110 64.667 0.0 772
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4145 K13126 - csin:114281995 891.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4145 1 52721134 52726391 Lja1g4145 1 52721134 52726391 ECH