Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4144 ATGAAGGTGCATCAGTTCACACGTGGATTCTGGGAGCACGAACCCTCCCTCACGCTCGGCTGCAAGAGATTACGCCCTCTCGCTCCCAAGCTTCCCAACACTACTGACACCACGGCCGCCGCCACCACCACCACCACTCATTCTCTTCCATTCGACATCAAGAGCTTCATCAGACCAGAAAGTGGCCCCATAAAACTCTTATCCTCTGATGATAATAAGAAAGATCCACCTTCACCCCAGAGCCAGGTTGAAACGCATCCGGGAGGGACAAGGTGGAACCCGACGCAAGAGCAGATAGGTATATTGGAGATGTTGTACAGAGGAGGGATGCGAACTCCAAATGCTCAGCAAATAGAGCAGATCACAGCTCAGCTTAGCAAGTATGGAAAGATCGAAGGGAAGAACGTGTTCTATTGGTTTCAGAACCACAAAGCGCGCGAGAGGCAAAAGCAGAAACGCAACAGCCTTGGCCTTTCTCATAGCCCTCGAACTTCCACCATTCAAACTATATCTTTGGAAACCAGAAGGGGAGAAGTGGTGGAAAGAGATGAGGAAGATAGTCCATACAAGAGGTGTAGGAGATGGGGATTTGAGTGCTTGGAAGAGCAAATAGGTAATAAGGAGGAGGAACATAGAACTCTGGAGCTTTTCCCATTGCACCCGGAAGGAAGATGA 675 0.4963 MKVHQFTRGFWEHEPSLTLGCKRLRPLAPKLPNTTDTTAAATTTTTHSLPFDIKSFIRPESGPIKLLSSDDNKKDPPSPQSQVETHPGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLSKYGKIEGKNVFYWFQNHKARERQKQKRNSLGLSHSPRTSTIQTISLETRRGEVVERDEEDSPYKRCRRWGFECLEEQIGNKEEEHRTLELFPLHPEGR* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4144 224 CDD homeodomain 90 151 IPR001356 GO:0003677
Lja1g4144 224 MobiDBLite consensus disorder prediction 62 94 - -
Lja1g4144 224 Pfam Homeodomain 90 149 IPR001356 GO:0003677
Lja1g4144 224 Gene3D - 89 156 - -
Lja1g4144 224 MobiDBLite consensus disorder prediction 73 94 - -
Lja1g4144 224 SUPERFAMILY Homeodomain-like 86 156 IPR009057 -
Lja1g4144 224 SMART HOX_1 87 154 IPR001356 GO:0003677
Lja1g4144 224 MobiDBLite consensus disorder prediction 148 167 - -
Lja1g4144 224 ProSiteProfiles 'Homeobox' domain profile. 85 150 IPR001356 GO:0003677
Lja1g4144 224 PANTHER WUSCHEL-RELATED HOMEOBOX 4 1 224 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4144 Lja-Chr1 52714638 52716081 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4144 1 156 Wox Gene Family AT1G46480 65.644 1.91e-67 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Lja1g4144 Homeodomain 5.3e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4144 - - gmx:100781015 364.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4144 1 52714638 52716081 Lja1g4144 1 52714638 52716081 ECH