Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4143 ATGATGATTAAACTCATGGAAGAAGAAAGAGATTGTTGTTCCACGAATTCCACGATCACAACCACCAGCAACAGCAGCAGAGAGAATAAACGGAAGCACCAACAAGACAAGCCGTACAGAGGAATAAGGCAGAGGAAGTGGGGCAAGTGGGTTGCAGAGGTTAGAGAACCTAACAAGAGGTCCAGGATCTGGTTAGGCTCTTATGCTTCACCGGTCGCCGCTGCACGCGCCTACGACACCGCCGTCTTCTACTTGAGAGGCCCCTCCGCCCGCCTCAACTTCCCGGAGTTGCTGTTCGAGGACGGCGGTGTCATATCGGCGGAGCAAGGCAGCGACATGTCCGCGGATTCAATACGGGAGAAAGCCACCAGAGTCGGCGCTAGAGTGGATGCTCTGCAAACCGCTCTGAAGGCATCCTCGTCATGCTCCGGTTCAAGTCAGACCACCACGGAAAAACCAGATTTGAACGAGTATCCAAAACCTGATGATGATGATGATGAAGACTCCTAG 510 0.5294 MMIKLMEEERDCCSTNSTITTTSNSSRENKRKHQQDKPYRGIRQRKWGKWVAEVREPNKRSRIWLGSYASPVAAARAYDTAVFYLRGPSARLNFPELLFEDGGVISAEQGSDMSADSIREKATRVGARVDALQTALKASSSCSGSSQTTTEKPDLNEYPKPDDDDDEDS* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4143 169 MobiDBLite consensus disorder prediction 136 169 - -
Lja1g4143 169 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 14 165 - -
Lja1g4143 169 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 14 165 - -
Lja1g4143 169 SUPERFAMILY DNA-binding domain 38 96 IPR016177 GO:0003677
Lja1g4143 169 SMART rav1_2 38 101 IPR001471 GO:0003700|GO:0006355
Lja1g4143 169 PRINTS Ethylene responsive element binding protein signature 77 97 IPR001471 GO:0003700|GO:0006355
Lja1g4143 169 PRINTS Ethylene responsive element binding protein signature 39 50 IPR001471 GO:0003700|GO:0006355
Lja1g4143 169 Pfam AP2 domain 39 87 IPR001471 GO:0003700|GO:0006355
Lja1g4143 169 Gene3D AP2/ERF domain 38 96 IPR036955 GO:0003700|GO:0006355
Lja1g4143 169 ProSiteProfiles AP2/ERF domain profile. 38 95 IPR001471 GO:0003700|GO:0006355
Lja1g4143 169 CDD AP2 39 97 IPR001471 GO:0003700|GO:0006355
Lja1g4143 169 MobiDBLite consensus disorder prediction 1 39 - -
Lja1g4143 169 MobiDBLite consensus disorder prediction 136 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4143 Lja-Chr1 52666648 52667530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4143 37 168 AP2-EREBP Transcription Factor Family AT2G23340 56.757 1.24e-51 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lja1g4143 AP2 3.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4143 K09286 - gmx:732579 204.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4143 1 52666648 52667530 Lja1g4143 1 52666648 52667530 ECH