Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4139 ATGGCTAACATAACAAACCACTCATGGCTACTCATGCAGCTACTGCTATTGCTGTTGCTACTCTCAACCACATTTTGCCATTCCTCCAACCTCACACCAGATCACCACCACCACCTCTCCGACGCCGCCGCATTGCTCGCATTCAAACTCAAAGCTGATCCCAACAACCACCTCAACTTCACCACCGCCGCCCCTTCCTTCTGCAACTGGCAAGGCGTCGAATGCACCGCACCCTACAAAGTAGTGCGCCTCGTCTTACGAGGCCTAGATCTCGGCGGCGTTTTCGCCTCTCACACCCTCTCCCGCCTCGACCAGCTCCGTGTCCTCAGCTTGCAGAACAACTCCCTCACCGGACCCATACCTGACCTCACCGGCTTCCTCAACCTTAAAACGCTCTTCCTCGACAACAACCACTTCACCGGTTCACTTCCTCCTTCATTGTTCTCCCTCCACCGCCTCAGAACCTTGGATTTCTCTCACAATAACCTCACCGGAAAAATCCCCCTCGCTTTCAACAACCTCAACCGTCTTAACTACCTCAGTCTCAGCTGGAACACCTTCAACGGTACACTCCCTCCGCTCAACCTGTCCTCCCTCAGAACATTCGACGTCTCCGGTAACAATCTCTCCGGCGCAGTTCCGGTGACCCCCACGCTCTTCCGTTTTCAGCCTTCTTCCTTCGCCTCAAACCCTTCTCTCTGCGGCGAAATCGTGCGCAAAGAATGCCACCCCACCGCGCCGTTCTTTGCCCCGACCTCGCCGCCGGCGAGGTCGGGGCTCGGCCAGAGCGCGCAGGTTCACGGTTTAATCCAGCAGCCATTCGGCAAAAGGCACGACAGGAGGGCTGTCATCATCGGCTTCTCAGCCGGGATCCTCGTTCTGATCTGCTCTGTACTCTGCTTCGTTTTCGCCGTGAGGAGCAAGAAGGGAGGTTCTTCTGCCCGGAGCGTGATGGCCTCCGACGCGGCGGCCACGGCAGAAGCTGCGGCGGTGATGCAGATGGAGCAGGAAAGAGAGCTGGAGGAGAAGGTGAAAAGAGCTCAGGTGGCGAAGAGTGGGAGCTTGGTATTCTGTGCGGGTGAGGCGCAGGTGTATAGCCTGGACCAGCTGATGAAAGGCTCGGCGGAGCTTCTGGGGAGAGGGCGGTTGGGGAGCACGTACAAGGCGGTGCTGGATAACCGTCTGATCGTGACAGTGAAGCGTCTTGATGCAGGGAAGATGGCTGCGCATGCATCGAAAGAGGTGTTCGAGCGTCACATGGAATCAGTGGGTGGTCTTCGTCATCCCAATTTGGTTCCTGTGAGAGCTTATTTTCAGGCCAATCAAGAGAGGCTCATTATCTATGATTACCAGCCCAATGGGAGCCTCTTCTCCTTAGTACACGGTTCCAGATCAAGCAGGGCAAGGCCATTACACTGGACATCATGCTTAAAAATAGCAGAGGATGTAGCACAAGGGCTGTCCTACATCCACCAAGCATGGAGACTAGTCCATGGCAACCTCAAGTCCTCCAATGTTCTCCTCGGACCTGATTTCGAGGCGTGCATCACAGACTACTGCCTCTCCGTGCTGACCAACCCATCCATTTTCGAAGAAGATGTTGATTCTGCAGCCTATAGAGCTCCAGAGATTCGCAACCCAAATCACCAGCCAACTACCAAAACCGACGTTTATTCCTATGGCATTTTGTTGCTAGAGCTTCTAACTGGGAAATATCCTTCTGAGCTGCCATTCATGGTTCCTGGTGAAATGTCAAGTTGGGTGAGGTCCATCAGGGATGACAATGGAGGAGAAGACAGCAGAATGGACATGCTTCTTCAGGTGGCTACAACTTGTAGCCTGACCTCGCCTGAGCAGAGACCCACAATGTGGCAGGTGTTGAAGATGTTGCAGGAAATCAAAGAGATTGTATTGTTGGAGGATAATGACTTGAACCTACAAAATAGTAATGCCTTGCCTTAG 1962 0.5382 MANITNHSWLLMQLLLLLLLLSTTFCHSSNLTPDHHHHLSDAAALLAFKLKADPNNHLNFTTAAPSFCNWQGVECTAPYKVVRLVLRGLDLGGVFASHTLSRLDQLRVLSLQNNSLTGPIPDLTGFLNLKTLFLDNNHFTGSLPPSLFSLHRLRTLDFSHNNLTGKIPLAFNNLNRLNYLSLSWNTFNGTLPPLNLSSLRTFDVSGNNLSGAVPVTPTLFRFQPSSFASNPSLCGEIVRKECHPTAPFFAPTSPPARSGLGQSAQVHGLIQQPFGKRHDRRAVIIGFSAGILVLICSVLCFVFAVRSKKGGSSARSVMASDAAATAEAAAVMQMEQERELEEKVKRAQVAKSGSLVFCAGEAQVYSLDQLMKGSAELLGRGRLGSTYKAVLDNRLIVTVKRLDAGKMAAHASKEVFERHMESVGGLRHPNLVPVRAYFQANQERLIIYDYQPNGSLFSLVHGSRSSRARPLHWTSCLKIAEDVAQGLSYIHQAWRLVHGNLKSSNVLLGPDFEACITDYCLSVLTNPSIFEEDVDSAAYRAPEIRNPNHQPTTKTDVYSYGILLLELLTGKYPSELPFMVPGEMSSWVRSIRDDNGGEDSRMDMLLQVATTCSLTSPEQRPTMWQVLKMLQEIKEIVLLEDNDLNLQNSNALP* 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4139 653 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 12 642 - -
Lja1g4139 653 Gene3D Transferase(Phosphotransferase) domain 1 452 647 - -
Lja1g4139 653 Pfam Leucine rich repeat 128 185 IPR001611 GO:0005515
Lja1g4139 653 SUPERFAMILY Protein kinase-like (PK-like) 376 631 IPR011009 -
Lja1g4139 653 ProSiteProfiles Protein kinase domain profile. 372 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g4139 653 Pfam Protein kinase domain 376 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g4139 653 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 12 642 - -
Lja1g4139 653 Gene3D Phosphorylase Kinase; domain 1 338 450 - -
Lja1g4139 653 SUPERFAMILY L domain-like 53 234 - -
Lja1g4139 653 Gene3D Ribonuclease Inhibitor 195 242 IPR032675 -
Lja1g4139 653 Gene3D Ribonuclease Inhibitor 39 194 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4139 Lja-Chr1 52585899 52589145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4139 14 651 Receptor kinase-like Gene Family AT5G43020 56.753 0.0 694
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Lja1g4139 Pkinase 9e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4139 - - cam:101511242 966.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4139 1 52585899 52589145 Lja1g4139 1 52585899 52589145 ECH