Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4133 ATGAACCAAAGATCTGTAACATCATTGAAAATGGTTCAGCCAAATTTCCTTAATCTTGATGCCCTTTACTGTTCAGAAGAACACTGGGAAGAGGAAGGACAAGATGAAGCAGAGTACTGTGGTGATTCCAGTACTAGTACTAGCACAATCATAAACTCCCCACCTTGGTTGCTAGAAAAGGACATGGTCTGGGAAGATGAAGAGCTAGCATCACTCCTAGCCAAAGAGCAGCAAAACCCACTTTGCAACTGCGATTCAGAGTTGGAAGGTGCTCGCAGAGAAGCAGTAGAGTGGATTCTGAAAGTGAATGCTCACTACTCCTTCTCTGCTCTCACTGCTGTTCTTGCTGTCAACTACCTCGACAGGTTTCTCTCCAGCTTCCGGTTTCAGGATATTGGGAAGCCATGGATGACTCATCTTGCTGCTGTTGCTTGCATCTCCCTCGCTGCAAAAGTGGAAGAGACCCATGTTCCTCTGTTACTCGATCTTCAAGTGGAGGAAAGCAAGTACTTGTTCGAAGCCAAGACGATTAAGAGGATGGAAATTTTGGTTCTTTCCACTCTGGGATGGAAGATGAATCCAGCAACCCCACTTTCGTTTATTGATTTTTTCATCAGAAGATTTGGATTGAAGGATCTTCTCTTCAGGGATTTTCTCAGGAGGTGTGAGGGTCTTCTTCTCTATGTCATTCGAGATTCCAGGTTTGTGAGTTATCTACCTTCTGTGTTGGCAACTGCTACAATGTTGTACGTTATCAATAGTGTAGAGCCTTGTCTTGGAGTTGAATACCAAACCCAGATCATTGGTATTCTAGGAATCAACAAGGACAAGGTTGATGAATGTTGCAAAGTGATGTTGGAAATGTGGTCAGGTATTGATGATCAGGGGAATAAGCTATGCATGAAACGCAAGTTTGGATTGATTCCTGGTAGCCCAAATGGAGTAGTGGATGTTTGTTTTAGCTGTGATAGCTCGAATGACTCATGGGCAGTGGCTGTGAATTCTGTGACATCTTCACCGGAGCCATTGCCCAAGAAGATCAGGACTCAGGACCAGCTTATGCAAAATCACTTTCATCTCTGA 1083 0.4404 MNQRSVTSLKMVQPNFLNLDALYCSEEHWEEEGQDEAEYCGDSSTSTSTIINSPPWLLEKDMVWEDEELASLLAKEQQNPLCNCDSELEGARREAVEWILKVNAHYSFSALTAVLAVNYLDRFLSSFRFQDIGKPWMTHLAAVACISLAAKVEETHVPLLLDLQVEESKYLFEAKTIKRMEILVLSTLGWKMNPATPLSFIDFFIRRFGLKDLLFRDFLRRCEGLLLYVIRDSRFVSYLPSVLATATMLYVINSVEPCLGVEYQTQIIGILGINKDKVDECCKVMLEMWSGIDDQGNKLCMKRKFGLIPGSPNGVVDVCFSCDSSNDSWAVAVNSVTSSPEPLPKKIRTQDQLMQNHFHL* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4133 360 Gene3D - 89 193 - -
Lja1g4133 360 ProSitePatterns Cyclins signature. 92 123 IPR006671 -
Lja1g4133 360 PANTHER CYCLIN D3.1 PROTEIN 43 348 - -
Lja1g4133 360 CDD CYCLIN 92 185 IPR013763 -
Lja1g4133 360 Gene3D - 194 283 - -
Lja1g4133 360 SMART cyclin_7 97 186 IPR013763 -
Lja1g4133 360 Pfam Cyclin, N-terminal domain 88 193 IPR006671 -
Lja1g4133 360 PANTHER CYCLINS 43 348 IPR039361 -
Lja1g4133 360 SUPERFAMILY Cyclin-like 178 296 IPR036915 -
Lja1g4133 360 SMART Cyclin_C_2 195 324 IPR004367 -
Lja1g4133 360 SUPERFAMILY Cyclin-like 63 193 IPR036915 -
Lja1g4133 360 Pfam Cyclin, C-terminal domain 196 289 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4133 Lja-Chr1 52533623 52535296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4133 13 288 Core Cell Cycle Gene Families AT4G34160 53.791 1.88e-95 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4133 K14505 - aprc:113874132 427.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4133 1 52533623 52535296 Lja2g0305 2 2781901 2783292 ECH
Lja1g4133 1 52533623 52535296 Lja4g3382 4 63957859 63959914 ECH
Lja1g4133 1 52533623 52535296 Lja5g0383 5 3386211 3388611 ECH
Lja1g4133 1 52533623 52535296 Lja1g4133 1 52533623 52535296 ECH