Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4121 ATGGAGACTCGTGTCGCCGCTAAGAGAAAGTCCATCAACCAATCCCAAAACCAATCCTTCAAAAAGAAACGAATCGTGTTGGGTGAGCTTCACAATTCATCACCCAATCTCAACATCCCTCAAACTTTGAAGAATCCCAAGCCCAACAAAACAACAGCAACAACGAACAAGATAGCTAGCAATGCCGTTGACACAGATTCAAGCACCGATGGCAAGCTCGAGTTTCGTTTTGATTCCGACATCTTCAGATATCTTCACGCAATGGAGATGGAGAAAAAGCGAAGACCGGTGATTAATTACATGGAGAAAGTTCAGATGGATATTACTCCTCACATGAGGGGAATTTTGGTGGATTGGTTAGTAGAGGTTGCTGAGGAGTATAGGCTTCTCTCTGACACTCTTCATCTTGCTGTTTCCTACATTGATAGGTTCCTATCTGTTAATATCGTCAACAAGCCCTCGCTTCAATTGCTCGGTGTTTCAGCTGTGCTCATCGCATCGAAGTATGAAGAAATTAACCCGTGCCATGTCGAAAAGTTGTGCTTCATCACTGATAACACATACAACAATGAAGAGGTTTTAAAGATGGAAGCTGACATTCTCAAGTCCCTAGATTTTGAAATGGGCAATCCTACTGTTAAGACTTTTCTAAGGAGGTTTACTGGGATTGGTTGCCAGGATAAAAAGTTTGAGTATCTGACTTACTATCTTGCTGAGCTAAGTTTGTTGGAGTATGATTGTTTAATGTTCTTGCCTTCTTTGGTGGCTGCATCTACAATGTTTCTAGCTAGTTTTATCATTTGGCCTGAGAATCATCCCTGGACACCAGCCCTGCAAGAACGCACTGGGTATACATCACTTGAGCTACAAGAATGTGTTCTTGTTTTACATGATTTATACATGGCAAGAAGTGGAGGGTCTTTCCAAGCTACTAGGGACAAATACAAGCAACATAAGTTTAAATGTGTGTCAAACTTGCCTGCGCCTCCGCATTTACCAAGTCATCTCTTTGAAGAAGTGATGTAG 1026 0.4191 METRVAAKRKSINQSQNQSFKKKRIVLGELHNSSPNLNIPQTLKNPKPNKTTATTNKIASNAVDTDSSTDGKLEFRFDSDIFRYLHAMEMEKKRRPVINYMEKVQMDITPHMRGILVDWLVEVAEEYRLLSDTLHLAVSYIDRFLSVNIVNKPSLQLLGVSAVLIASKYEEINPCHVEKLCFITDNTYNNEEVLKMEADILKSLDFEMGNPTVKTFLRRFTGIGCQDKKFEYLTYYLAELSLLEYDCLMFLPSLVAASTMFLASFIIWPENHPWTPALQERTGYTSLELQECVLVLHDLYMARSGGSFQATRDKYKQHKFKCVSNLPAPPHLPSHLFEEVM* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4121 341 MobiDBLite consensus disorder prediction 32 53 - -
Lja1g4121 341 MobiDBLite consensus disorder prediction 1 20 - -
Lja1g4121 341 PIRSF Cyclin_A_B_D_E 1 340 IPR039361 -
Lja1g4121 341 CDD CYCLIN 112 201 IPR013763 -
Lja1g4121 341 PANTHER CYCLINS 17 339 IPR039361 -
Lja1g4121 341 Pfam Cyclin, C-terminal domain 211 328 IPR004367 -
Lja1g4121 341 CDD CYCLIN 211 297 IPR013763 -
Lja1g4121 341 PANTHER CYCLIN-A3-1-RELATED 17 339 - -
Lja1g4121 341 SUPERFAMILY Cyclin-like 78 208 IPR036915 -
Lja1g4121 341 Gene3D - 80 325 - -
Lja1g4121 341 SUPERFAMILY Cyclin-like 211 331 IPR036915 -
Lja1g4121 341 Gene3D - 94 209 - -
Lja1g4121 341 Pfam Cyclin, N-terminal domain 80 208 IPR006671 -
Lja1g4121 341 ProSitePatterns Cyclins signature. 113 144 IPR006671 -
Lja1g4121 341 SMART Cyclin_C_2 211 329 IPR004367 -
Lja1g4121 341 SMART cyclin_7 118 202 IPR013763 -
Lja1g4121 341 SMART cyclin_7 215 298 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4121 Lja-Chr1 52265194 52267276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4121 3 340 Core Cell Cycle Gene Families AT5G43080 53.216 8.58e-125 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4121 K06627 - gmx:100776007 395.586