Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4120 ATGGGGAGAGTGAAGCTTCAGATCAAAAAGATTGAGAACACAACAAATAGACAAGTTACTTTCTCAAAGAGGAGGAATGGGCTGATCAAGAAAGCTTATGAACTTTCTGTTCTTTGTGATGTTGATGTGGCTCTAATCATGTTTTCCCCATCTGGAAGAGCCTGTCTCTTCTCAGGCAATAGAAGCATTGAAGAAATTCTAGAACGATATATAAATCTCCCGGAGAGTGAACGCGGAAGGACACATAATCAAGAGCAAATCCAAAAGGTGCTTTGTAAGATGAAAGCTGAGGGTGATCAATCATGCCAAGCTCCAAGCCCGGTGATTACAGACTCCCAACTTGAGGAGATTCAAAGACAAATTTTTCTTTGCAAGTCTCAATTGGAAGAGATGGAGAAGCGACTGAGGGTATTTGAAGGTGATCCTTCTGAGATCACAACTCTGTGTGAGGCTGAGTATCGTGAAAAAGTCCTTCAGGAAACTCTAAAACAAGTGCAACTAAGAAAAGTACACCTTGCAAAAATTGTAGATGGATTTGTTAGCAGAACCTCGAATACATTAGACTGGTTTCCACAGGGAGATCCACATGTTCATATTATGAACCTCGCCAATGCTTATGACCCTGCTCCTCTCAGTGATCAACAATCAATTAGTAATGTTGTTGATATGGTAACGCCAACTTCAACCCTTCTATACACAACAAACATAGATCATGGAGCTCAAATGAATCCTGGCAATAGAGTAGTGGCTGGCATAAATAACACACTGCATCCTCAGTTTGAACCAGTTATCGACTTCAACTCATCTTCTTGGGGACATCTCCATCATTTAGAGAGTGGATCAATGTCAGTTGCAGAAACACGGGAAGGACAACTACTCGAACAGTATTTTTCTCAGTTTACTCCATCAACTAACTTAATGCCCAATCACAATCAAACTCATGCATGA 948 0.4082 MGRVKLQIKKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRACLFSGNRSIEEILERYINLPESERGRTHNQEQIQKVLCKMKAEGDQSCQAPSPVITDSQLEEIQRQIFLCKSQLEEMEKRLRVFEGDPSEITTLCEAEYREKVLQETLKQVQLRKVHLAKIVDGFVSRTSNTLDWFPQGDPHVHIMNLANAYDPAPLSDQQSISNVVDMVTPTSTLLYTTNIDHGAQMNPGNRVVAGINNTLHPQFEPVIDFNSSSWGHLHHLESGSMSVAETREGQLLEQYFSQFTPSTNLMPNHNQTHA* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4120 315 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lja1g4120 315 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Lja1g4120 315 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lja1g4120 315 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lja1g4120 315 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lja1g4120 315 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 173 - -
Lja1g4120 315 Coils Coil 114 134 - -
Lja1g4120 315 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
Lja1g4120 315 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lja1g4120 315 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
Lja1g4120 315 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Lja1g4120 315 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL104 ISOFORM X1 1 173 - -
Lja1g4120 315 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL104 ISOFORM X1 183 286 - -
Lja1g4120 315 PANTHER SERUM RESPONSE FACTOR HOMOLOG 183 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4120 Lja-Chr1 52262464 52264873 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4120 1 172 Type I MADS-box Gene Family AT1G22130 50.000 1.79e-53 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lja1g4120 SRF-TF 1.9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4120 - - mtr:MTR_3g102570 461.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4120 1 52262464 52264873 Lja1g4120 1 52262464 52264873 ECH