LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja1g4119	ATGAGTTCTCCGTCGCCGGAAGAGGATTCAAAACAAGGAGAAGAAGAAGAGGGAAACCGCCTTCTACAAAGGGAGGAAGAAGATGAAGAAGAGGCGGCGTATGAAGCCGGAGAGAAAATCGCGGTGGTGGATTTCGACTTCGAAACGGTGGACGAATCAACTGTGCCACCATTTTCATGGAAGAAGCTATGGATGTTCACAGGGCCAGGGTTCTTGATGAGCATAGCGTTTTTGGATCCAGGGAATCTGGAAGGGGATCTGCAAGCTGGTGCCATCGCCGGTTACTCGCTGCTATGGCTGTTGATGTGGGCTACCTTCATGGGTCTCTTGATTCAGCTTCTTTCTCTCAGGGTCGGCGTCGCCACCGGCCGCCACCTCGCCGAGCTCTGTAGGGACCACTATCCAAATTGGGCTCGTCTTGTGCTGTGGTTCATGGCTGAGGTTGCTTTGATTGGTGCTGATATTCAAGAGGTTATTGGTAGTGCCATTGCGATCCAAATTCTTAGCAGAGGCCTTTTCCCTCTCTGGGTTGGAGTTCTTATCACTGCTTCTGATTGCTTTTTCTTTCTATTTCTTGAGAACTATGGAGTGAGGAAGTTGGAAGCTGCTTTTGCGGTTCTCATCGCTACCATGGCTCTTTCTTTTGCCTGGATGTTTGGTGACGCAAGACCTAGTGGGAAAGAACTTATGATGGGTATTTTGATTCCAAGACTCAGCTCAAAAACAATTCGTCAGGCTGTAGGTGTTGTGGGTTGTGTCATAATGCCACACAATGTATTCCTGCATTCTGCTTTGGTGCAGTCAAGAAAGATTGACCCACAAAAGAAAGTCCGTGTACAAGAGGCTCTCAATTACTATACAATCGAGTCCTCAGTTGCACTTACAGTCTCCTTCATGATCAATCTATTTGTCACAACAGTTTTTGCTAAGGGTTTTTATGGTACGAAGCAGGCAGATAGCATAGGATTGGTGAATGCAGGGCAGTATCTTGAGGAAAAGTATGGAGGAGGGGTCTTCCCTATTCTTTATATATGGGGAATCGGGTTATTGGCAGCTGGACAGAGTAGCACTATCACTGGAACATATGCCGGGCAATTCATTATGGGGGGTTTCCTCGACCTTCGGTTAAAGAAATGGTTGAGAGCATTGATCACTAGAAGTTGTGCAATTGTGCCAACTATAGTTGTAGCTATTGCTTTTAATAGATCGGAAGGGTCACTGGATGTTTTGAATGAGTGGCTTAATGTGCTTCAGTCCATGCAAATTCCCTTTGCACTGATTCCCCTCCTCACGTTGGTCTCCAGTGAGCAGATCATGGGCACCTTTAAGATTGGGCCTGTTCTTGAGAGGGTGGCATGGACTGTTGCTGTACTGATAATAGTAATCAATGGGTATCTCTTGGTAGATTTCTTCGTTTCTGAGGTGAACGGCCTATTGCTTGGTTTTGTAGCCTGCTCTTGCACAGTTGCATATGTTGCATTCATTGTATATTTGGTTTCATTGAGCGGTGCTCTTCCTTCCTCTTGGGTTAATCGACTTCCTAAGGGATTTTCTACTATTGCTGGGAATTAA	1572	0.4612	MSSPSPEEDSKQGEEEEGNRLLQREEEDEEEAAYEAGEKIAVVDFDFETVDESTVPPFSWKKLWMFTGPGFLMSIAFLDPGNLEGDLQAGAIAGYSLLWLLMWATFMGLLIQLLSLRVGVATGRHLAELCRDHYPNWARLVLWFMAEVALIGADIQEVIGSAIAIQILSRGLFPLWVGVLITASDCFFFLFLENYGVRKLEAAFAVLIATMALSFAWMFGDARPSGKELMMGILIPRLSSKTIRQAVGVVGCVIMPHNVFLHSALVQSRKIDPQKKVRVQEALNYYTIESSVALTVSFMINLFVTTVFAKGFYGTKQADSIGLVNAGQYLEEKYGGGVFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLDLRLKKWLRALITRSCAIVPTIVVAIAFNRSEGSLDVLNEWLNVLQSMQIPFALIPLLTLVSSEQIMGTFKIGPVLERVAWTVAVLIIVINGYLLVDFFVSEVNGLLLGFVACSCTVAYVAFIVYLVSLSGALPSSWVNRLPKGFSTIAGN*	524

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja1g4119	523	PANTHER	BNAC08G04640D PROTEIN	22	511	-	-
	Lja1g4119	523	Hamap	Divalent metal cation transporter MntH [mntH].	49	471	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lja1g4119	523	PANTHER	SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER	22	511	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lja1g4119	523	TIGRFAM	nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family	61	439	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lja1g4119	523	MobiDBLite	consensus disorder prediction	1	33	-	-
	Lja1g4119	523	PRINTS	Natural resistance-associated macrophage protein signature	197	218	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lja1g4119	523	PRINTS	Natural resistance-associated macrophage protein signature	381	398	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lja1g4119	523	PRINTS	Natural resistance-associated macrophage protein signature	246	269	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lja1g4119	523	PRINTS	Natural resistance-associated macrophage protein signature	415	434	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lja1g4119	523	PRINTS	Natural resistance-associated macrophage protein signature	142	168	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lja1g4119	523	PRINTS	Natural resistance-associated macrophage protein signature	353	372	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lja1g4119	523	PRINTS	Natural resistance-associated macrophage protein signature	172	191	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lja1g4119	523	Pfam	Natural resistance-associated macrophage protein	84	445	IPR001046	GO:0016020\|GO:0030001\|GO:0046873

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja1g4119	Lja-Chr1	52251103	52255723	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja1g4119	7	503	Inorganic Solute Cotransporters	AT1G47240	78.782	0.0	812

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja1g4119	K21398		-	gmx:100791117	887.1

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja1g4119	1	52251103	52255723	Lja1g4119	1	52251103	52255723	ECH