Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4112 ATGGTCATCACAACCTTTGAAGGAGCCGGCGTCGGATTTGGTATGCTGGATTTGGATGTCACAATTTCTGCATATTCGGCGAATCTCAAATCTCTATCTCACTCTGGATTTTGTCTTTTCCTTTCAGGTTTCGGTGTTGGTTGCGGTTTCGGTGTGGGATGGGGTTTCGGAGGTATGCCGTTGAACTTATTGGGTCTTGGTGTAGGTGGAGGCTGTGGCGTTGGAGTAGGACTTGGATGGGGGTTTGGCTCTGCATTTGGTAGTAAGTATCGGTCATCACAGATCAGATTTCAAGGAGTGGAGTTTGATAGTAAAGAGAAAGGTGACAGCCCTCCGTTGTCAAAACCCACCCCAGAAGTAATTCTCAGTTTGGTCATTGAGGTACCAATTAAACATCCTGAGTTGTTTGAAAGTCCTGGAATAGCACAACCAAAGGGTGTTTTACTCTATGGTCCACCTGGTACAAGAAAAACACTGTTGGCTAGGGCAGTTGCGCACCATACTGATTGTACATTCATCAGGGTGTCTGGCAAGCTCTCTATCCCCCTCTCTCATGAAGAATTTCATGGACATCCATTTGCTTGGTTTGATCAGTATGTGCTCCTTTGTTTTATCCATCACATGAAGCATATCAAATTGCAACAGAACTTTACTCAGCTGGGTAGGATCAGTGCAAAGTAG 681 0.4523 MVITTFEGAGVGFGMLDLDVTISAYSANLKSLSHSGFCLFLSGFGVGCGFGVGWGFGGMPLNLLGLGVGGGCGVGVGLGWGFGSAFGSKYRSSQIRFQGVEFDSKEKGDSPPLSKPTPEVILSLVIEVPIKHPELFESPGIAQPKGVLLYGPPGTRKTLLARAVAHHTDCTFIRVSGKLSIPLSHEEFHGHPFAWFDQYVLLCFIHHMKHIKLQQNFTQLGRISAK* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4112 226 CDD AAA 142 177 - -
Lja1g4112 226 PANTHER BNAA02G04630D PROTEIN 125 177 IPR035261 GO:0036402
Lja1g4112 226 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 123 176 IPR027417 -
Lja1g4112 226 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 125 177 - -
Lja1g4112 226 Pfam ATPase family associated with various cellular activities (AAA) 147 178 IPR003959 GO:0005524|GO:0016887
Lja1g4112 226 Gene3D - 122 178 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4112 Lja-Chr1 52134093 52141783 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4112 126 177 Calmodulin-binding Proteins AT3G56690 46.154 1.41e-09 55.8