Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4102 ATGGATGATCTTTCTTCCACTTCCAGCCTTCTCTGTGAAGAAAACGTGACTTGCTTGGGAGATGAAGATGAACAACAACAACTGCAACACCCTTTCATTCAATCAGAACTGGGTTTTTGTGATGAGCATGTTGCTGTTCTGATTGAGAGAGAGGCTGTTTTTGGGTTCAAAAAGGATGAAAGTTTGCTCATTGAGGACTGGTTGAAACATGCCCGAATGGATGCAATCAATTGGATTCTCAAAACCAGAGCAACATTTGGTTTTCGCTTTCAAACAGCTTATTTGTCTGTCACATACTTCGATCGAATCCTTTCTAAGCGATCCGTTGATAGTGAAAACAAGTTTTGGGCAATTCGGTTATTATCAATTGCATGTCTTTCATTGGCTGCAAAGATGGAGGAATGCAATGTGCCAGGGCTATCAGAGTTTCATTGGGAAGATTATTCATTTCAGGGAAAAGTGATTCAGAATATGGAGCTTTTGGTGCTGACCACTTTGGAGTGGAACATGGACATTGTCACCCCCTTTGCTTTTCTTCATTATTTTGTCACAAAGTTATGCAGTGAATCCCCTCCAAGTCCTATTTTTTCCAAGACCATACAACTCATTGTAGCCACAATGAAAGAGGTCAATTTAATGGATCACAAACCGTCTGTTATTGCAGCAGCTGCTACTTTGGTGGCATTGGATCAGAAATTGACCATAGAAGCAGTGAAGTTGAAGATGAGTTCAATTCCTCAACTTCAGCTTATTGAACCTAATGATGTATTTGGGTGCTACATTCTAATTCAAAGATTATATGAGGAGGAGAAGACTAGAGGAGACAAGCTTTTACATACTCCAAATTCTTCACCCTTCCGATCCAGGCCAATTGACATGACAGAAAGCTCTCAAGCTACTTCTTCTAAGAGAAGAAGACTCACGTTTGATGATGAACAAAGTCATGATGGCAAGGGACTTGACCAGGAAAGTCCAAAACCTTGA 984 0.4055 MDDLSSTSSLLCEENVTCLGDEDEQQQLQHPFIQSELGFCDEHVAVLIEREAVFGFKKDESLLIEDWLKHARMDAINWILKTRATFGFRFQTAYLSVTYFDRILSKRSVDSENKFWAIRLLSIACLSLAAKMEECNVPGLSEFHWEDYSFQGKVIQNMELLVLTTLEWNMDIVTPFAFLHYFVTKLCSESPPSPIFSKTIQLIVATMKEVNLMDHKPSVIAAAATLVALDQKLTIEAVKLKMSSIPQLQLIEPNDVFGCYILIQRLYEEEKTRGDKLLHTPNSSPFRSRPIDMTESSQATSSKRRRLTFDDEQSHDGKGLDQESPKP* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4102 327 Pfam Cyclin, N-terminal domain 69 170 IPR006671 -
Lja1g4102 327 Pfam Cyclin, C-terminal domain 173 271 IPR004367 -
Lja1g4102 327 SMART cyclin_7 77 164 IPR013763 -
Lja1g4102 327 MobiDBLite consensus disorder prediction 304 327 - -
Lja1g4102 327 ProSitePatterns Cyclins signature. 72 103 IPR006671 -
Lja1g4102 327 SUPERFAMILY Cyclin-like 40 170 IPR036915 -
Lja1g4102 327 MobiDBLite consensus disorder prediction 274 327 - -
Lja1g4102 327 Gene3D - 172 237 - -
Lja1g4102 327 CDD CYCLIN 72 163 IPR013763 -
Lja1g4102 327 PANTHER CYCLINS 37 287 IPR039361 -
Lja1g4102 327 PANTHER CYCLIN-D5-1 37 287 - -
Lja1g4102 327 MobiDBLite consensus disorder prediction 278 303 - -
Lja1g4102 327 Gene3D - 67 171 - -
Lja1g4102 327 SUPERFAMILY Cyclin-like 155 245 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4102 Lja-Chr1 52050363 52051833 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4102 6 245 Core Cell Cycle Gene Families AT4G37630 35.039 3.16e-41 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4102 K18811 - gmx:100780266 405.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4102 1 52050363 52051833 Lja1g4102 1 52050363 52051833 ECH