Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4077 ATGAATTGGAAGATGGATTCTGATAGAGCCAAGCTCTTTGTAGGAGGCATTTCCCGCGACACCACCGAAGAAATTCTCAAACACCACTTCACCAAGTACGGTAATGTCTCCGATTCCACCATTTCCATTGACCGCACCACTCGAAGCCCTAGAGGTTTTGGCTTCGTCACCTTCTTCGATCTCTCTGCAGCTCACAGAGCCCTTCAAGATACCCATGTCATACTTGGAAAAACGGTAGAAGTGAAAAAAGCAATACCCAGAAGTGAACAGCAACTACAGCATAACCAATTTCAGAATAATAGAGGGGGAAGTAATTATAGTAGTTATGACTGTAGCAATGACTATATTAGGACTAAGAAGATTTTTGTGGGAGGTTTGCCTGCTACTATATCTGAGGTGGAGTTTAAGAATTACTTTGAGAGGTATGGTAGGGTAACAGATGTAGTGGTGATGCAGGACAGTGTGACTCGTCGGCCGAGGGGGTTTGGGTTCATTACTTTCGATTCGGAGGAGTCGGTGCAGAATGTTATGATGAGGAGTTTTCATGATTTGAATGGTAGACAGGTGGAGGTCAAGAGGGCTGTTCCGAAAGAGGGGAACCCTGGTTATGATGGTTTCAATGGGTTAAGGTATAAGAGTGAAAGAGGAGGCGCGAAAAGTTCACCTCATTATAGTCCTAGGAACATGGTTCCTGGCTATGGTCCTTTGCCTTGGTATAATAGTGATGGAGTATATCCATATGGATCAGACACGTACGGTAGCTGGTACACTATGGGTGGGTATGTTGGGAATGGATATGCAGTTCCATCTGATGCTTATAGGAACTTTTGGTATGGGCAAATGGTAACTGGTCCTCAGGTGCCTTATGCTAGTGCATCGCCGTCCTTTGCATATGTGGGTGGTGGTAGGGTTGGGATAGTAGGTAGCGGTGCTGTAACTTTGGGGTACAATGGCGTTCCTGGGTATGCAACAAATATGAAGTTTGATCAACCTTTTAATGCCAATGGATTTGTTCCAGGCAGTTTGACAGCACCTGATGGGGTTAAGCAGGACGTTGACTCTTCAAGTTTGAAAGGAAGCAATGGTGAAATCTCTAGCTAA 1101 0.4496 MNWKMDSDRAKLFVGGISRDTTEEILKHHFTKYGNVSDSTISIDRTTRSPRGFGFVTFFDLSAAHRALQDTHVILGKTVEVKKAIPRSEQQLQHNQFQNNRGGSNYSSYDCSNDYIRTKKIFVGGLPATISEVEFKNYFERYGRVTDVVVMQDSVTRRPRGFGFITFDSEESVQNVMMRSFHDLNGRQVEVKRAVPKEGNPGYDGFNGLRYKSERGGAKSSPHYSPRNMVPGYGPLPWYNSDGVYPYGSDTYGSWYTMGGYVGNGYAVPSDAYRNFWYGQMVTGPQVPYASASPSFAYVGGGRVGIVGSGAVTLGYNGVPGYATNMKFDQPFNANGFVPGSLTAPDGVKQDVDSSSLKGSNGEISS* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4077 366 Gene3D - 2 114 IPR012677 -
Lja1g4077 366 Gene3D - 116 202 IPR012677 -
Lja1g4077 366 SMART rrm1_1 11 82 IPR000504 GO:0003723
Lja1g4077 366 SMART rrm1_1 120 192 IPR000504 GO:0003723
Lja1g4077 366 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 121 177 IPR000504 GO:0003723
Lja1g4077 366 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 78 IPR000504 GO:0003723
Lja1g4077 366 MobiDBLite consensus disorder prediction 348 366 - -
Lja1g4077 366 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 5 357 - -
Lja1g4077 366 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 119 196 IPR000504 GO:0003723
Lja1g4077 366 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 5 357 - -
Lja1g4077 366 MobiDBLite consensus disorder prediction 344 366 - -
Lja1g4077 366 SUPERFAMILY RNA-binding domain, RBD 6 109 IPR035979 GO:0003676
Lja1g4077 366 SUPERFAMILY RNA-binding domain, RBD 112 216 IPR035979 GO:0003676
Lja1g4077 366 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 86 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4077 Lja-Chr1 51800931 51802619 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4077 12 189 Eukaryotic Initiation Factors Gene Family AT1G71770 28.177 5.98e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4077 K14411 - gmx:100816822 545.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4077 1 51800931 51802619 Lja1g4077 1 51800931 51802619 ECH