Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4064 ATGGTTGGTTTTGATAACTCTATCCCAGGCCTTCGACTTGGTCTTGGTCTTGGCCATTGCATGATGAAAACTGATCATGAACACAGGAAGAAGAAAAAGGAGGATCAGGATCCATGTAACAAGTTAGCATACCCATCTCTTAAGTTAGGACTCCCTGATCATGATGATGTTGATCTAACTACAAATAACAATGATCAATTAATACTAGCTACAAAGACTGAATCTGAGGATTGGTTTCATCATCCACATACCTCTAATTCTCCAAGCGCGGTTTCTTCATTAATCTCCAACTCTTGTAGCATCAAGAGGGAGAGAGATCAGTTCTCAGGTGATGAAGAATTGGAGCTAGATGTAGAGAATACTCACTCAAAGGCCGTTGATGTTGAAGAAAATGGTAGTCCCAGGAAGAAACTCAGGCTCACCAAACAACAATCCCTGCTCTTAGAAGATATCTTCAAGCAGCATTCTACTCTCAATCTGAAACAAAAGCAAGAGTTAGCAAGGAAGCTGAATCTGCGGACGAGACAAGTGGAGGTGTGGTTTCAGAACAGAAGAGCCAGGACAAAACTGAAACAAACAGAATCCAACTGTGAGTTATTGAAGAAGTGCTGTGAAACTCTAACTGAGGAGAACAAGAGGCTGCAAAAGGAGCTGCAAGAGATTAAATCAATGATGAAAAGTACAAAGCCAGATCAAACTTTGTATATGCAGCTTCCACTTACAAGCCTCACCATTTGTTCTTCTTGTAAGCGAATTCGCAGTGGCGAGAGCAATAATGGCTCTGCTTCTTCTTCTACTACTACCACAGCCTTTACTATTAGTCCAAAGAGGTCCATCATCACTTCTATAGGTGCTAGCTACTCATGA 867 0.4141 MVGFDNSIPGLRLGLGLGHCMMKTDHEHRKKKKEDQDPCNKLAYPSLKLGLPDHDDVDLTTNNNDQLILATKTESEDWFHHPHTSNSPSAVSSLISNSCSIKRERDQFSGDEELELDVENTHSKAVDVEENGSPRKKLRLTKQQSLLLEDIFKQHSTLNLKQKQELARKLNLRTRQVEVWFQNRRARTKLKQTESNCELLKKCCETLTEENKRLQKELQEIKSMMKSTKPDQTLYMQLPLTSLTICSSCKRIRSGESNNGSASSSTTTTAFTISPKRSIITSIGASYS* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4064 288 Pfam Homeodomain 135 189 IPR001356 GO:0003677
Lja1g4064 288 ProSitePatterns 'Homeobox' domain signature. 166 189 IPR017970 GO:0000981|GO:0006355
Lja1g4064 288 SMART HOX_1 133 195 IPR001356 GO:0003677
Lja1g4064 288 SMART halz 191 238 IPR003106 GO:0006355|GO:0043565
Lja1g4064 288 ProSiteProfiles 'Homeobox' domain profile. 131 191 IPR001356 GO:0003677
Lja1g4064 288 CDD homeodomain 134 192 IPR001356 GO:0003677
Lja1g4064 288 Pfam Homeobox associated leucine zipper 191 225 IPR003106 GO:0006355|GO:0043565
Lja1g4064 288 SUPERFAMILY Homeodomain-like 130 192 IPR009057 -
Lja1g4064 288 Coils Coil 190 227 - -
Lja1g4064 288 PANTHER - 1 281 - -
Lja1g4064 288 Gene3D - 128 198 - -
Lja1g4064 288 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 1 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4064 Lja-Chr1 51463218 51465093 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4064 101 276 Homeobox Transcription Factor Family AT4G37790 56.522 4.95e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lja1g4064 Homeodomain 7.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4064 K09338 - gmx:100790927 272.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4064 1 51463218 51465093 Lja1g4064 1 51463218 51465093 ECH