Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4059 ATGTTTAGTCGCAAAGGGTGGGTTTCCCTAATTAGGATTCCAGGGAAGAGTATACTTTCCCTCTTCACGTCATCGTATAAAAATTTCAAAACCAAGTATTTTCGTGTTAAAAACAGTCAAGATTTCCCTGAATTGATAAAAGATGCTAGCGGGGGCTATAAATTTCCTCTATACTGGTCATCCAACCCCTCGCCAATTAGTGTGACTGACCGATCTAGCCTTACGCCTATTGAACGAGTTCATGCCAGTTTCCTGGAGACCTTTCCTACCCTGAGTAGCTCTGATATAATCAATTTGGGAAACAAACCAGTTGCCTTGCGACAGTATTTAGCCAAGATGTCTCCCATGACCGATGCAGACCTTTTGGCTTATTACACCAAGAAGAACAAAGCTAAGAAGACCAATGCTACTAATGGAAAAGATCAAGCCCCTGAAAACAAAGAGCTGACTGAACAATCTGAGTCCACCATCAAGGAAATTTTCACCAAAAAAAGAAAAAAGATGTCTGAAAATTCTGCTGAAGTTTCTACCTCTAATCTGTCGAGGCCCTCGACTCAGAAGTCATTTTCCAAGACTAGTGAAATTGAACAGTGGCAGTCAGTCCTCCAAGAGTGTGAGAACAAGGTCGTTGGCGAGGCATCGAGTCTCAGGGACAAGCAATTCCCAATATCTGACTTAATTGATACCTATCTCACCAATAATAAGGATGTGGAGAAAGTGAAAAATCTCAATTCTGAAAAACTTTGCCAAGCTTTGGAAACCTATGCTCTCCAAACTACCTTCCTTGCTCAATCTTTGGAGAAGAGATGGGAACAACATGAGAAAGATTTTGAAACTTTGAAAAGAAGCAACGAAGAACTCAAGGGTCAGTTGGACAAGGCAAAGAAGGCTGAGAAGGATTTAGATGATTTAAGAAAGAAGTTTCATGCTCAGGAACTTGAGAATATAGTAAAGGATTTGAAGTTTAAGGAGATGGAAGAAGAGAAAAAGAATTTGGTTACTACTTTGGAGACTGATCGCGATGAACTTAAAGTGGCTTGTGAGAATCTTGAGGCTGAAGTGGAAGAGTTGAAGGGTGAGGTGGCTTTAAAGTATGCGTCCGGGTTTGATAAAGCTATTATGCAGTTCACAGGTCTGCACCATGGCTTCTTCTGCAGACCCACTTACTCTCATGCTCAAAACAAAGTGCAACCCATCAAAGCTTCCGTTGCTGCACTCCCATTTCCATTGTTTCAACCTCCCAAAGTTGAAGAATCAACGTCTGAGTTGGAGCCTGCAGACCCTGACTTCTACCGGATAGGTTATGTCCGGAGCATGCGAGCTTACGGAATTGATTTTAAGGAAGGGCCAGATGGTTTTGGTGTGTATGCTTCCAAAGATGTAGAACCTCTTCGCCGGCCAAGGGTTATAATGGAAATTCCTCTTGAATTGATGCTAACCATAAGCAAGAAGCTACCGTGGATGTTTTTCCCTGATATAATTCCCATTGGTCATCCAATATTTGATATTATCAACTCGACAAATCCAGAGGAGGAACTTTTGGAGCTGCAGGATCCTAATCTCGCTTCTACTATGAGAAGTCAGCAACAACGAGCCTTAGAATTCTGGGAGAAAAACTGGCATAGTGGTGTACCCCTTAAAATAAAGCGTCTTGCTCGTGATCCTCAGAGGTTCATTTGGGCAGTAGGTATTGCACAATCACGATGTATTAATATGCATATGAGAGTTGGCGCGTTAACTCAAAACGCAAACATGCTGGTTCCTTATGCTGATATGCTGAACCATTCATTTGAGCCAAATTGTTTTTTTTTCATTGGCGTTTTAAGGACTGGATGCTTGAACGACATGTTTTTGATTTGTATTCTGAAGTTTAATATCCACTTTAAATGCGAAGGCTGTGAGCAGAAAGTAAAGAAACTGCTGCAGAAAATCGATGCCGTTCACGATCCTCGGGTCACGAACCGTCCGAAAATCTCAACCATTCATTTGCTTCAAAAGAACCTTCTGTACCCCATTACATGTTTGAAGCTTCAAGGTGATTTCTTCGCGCTCAACTGGTTGCTGAAGCTTCACCATCTCGTCACGTTTGATTTCACTATCAGCTTCTTCTTCTTCAACCTCTCAGATTGGGAAATGTTGCTGGTAAAGAAAAAGAAGAAGATAGTGTCTTGCTCTTCATCATCTGAGAATTATGACTGGGCCAATTTAGAAGTACGTAGGTTATCTTCATTTTATAAGTCCCCAGAATCAGTGAAGAAGCTTAGGTCTCAGTTGTCCTTATCATATTCAAAAGAGAATGCAGGAAAAATCATTGTAGAGGCATGTCGAATGAGCGAGCCTGTTTGTTTCAATCCACCACCAGGGGCTTTAAAGGAGTATTTTTACATGTATGAGACTTTTTTTAGCAGATTGAACATTAAACTCCCTTTCTCGGACTTCGAATGTGATGTTCTAAGAACTCTGAATGTTGCTCCTACCCAGTTGCATCCTAATAGTTGGGCGTACATTCGCGCATTCATCCTGCTATGCCGAAACTATAAGATAAACCCCTCTGCCTGTCTGTTCTTTTGCTTCTTTAAATGGAAGTTGAGTCGTAAAGGGTGGATTTCCCTGAATGGGATTCCACGGAAATGTATGTTTTCCCTCTTTACCTCATCCTATAGACGTTTCAAAACCAAGTACTTTCGTGTTAAAAACAGACAAGATTTCCCTGAATTGATAAGAGACGCTAGCGGGGGCTATAAGTTTCCTCTATACTGGTCATCCAACCCCTCGTTGATTAGTGTGACTGACCGATCTAGCCTTACGCCTGTCGAACGAATTGATGCAAGCTTCCTTGAGAAGTTTCCTATACTCAGTAGCTCTGATATAATCAATTTGGAAAACAAACCAGATGCCTTGCGACAGTATTTAGCCAAGATGTCTTCGATGACCGATGCAGACCTTTTGGCTTATTACACCAAGAAGAACAAAGCTACCAAAGGAAAAGATCAGGCCCCTGGTAGCCATGAGCAGAGCGAACAATCTGAGTCCACTGTATGGGAAATTCTTACCAAAAAGAGGAAAAGGACATCTGAAAATGTTGCTGAAGTTTCTGCCTCTAATCTCTCGACTCATAAGTCATCTATCAAGAGTTGTGAAATTGAACACTGGCAGTTAGTTCTCCATGAGTGTGAGAACAAGGGTGTTGGTGAGGCATTAACCCTTTGGGACAAACAATTCCCAATACCTGACATAATTGATACCTGCCTCACCAAGAGTAAGGATGTGGAGAAAGTGAAAAAGCTGGGCCCTCAACAACTTAGCCGAGCTTTGGAAACGTACACTGTACAATCTGCCTTCCTTGCTCGATCTTTGGAGAAGGAATTGGAACAACATGAGAAAGATTTTGAAACTTTGAAAAGAAGCAATGGAGAACTAAAGGGTCAGCTGGATAAGGCAAAGAAGTCCGAGAAGGATTTAGACGACTTAAGAAAGAAGTTAGATACTCTGGAACTTGAGAATATAGAAAAGGATTTAAAGATTAAGGAGTTGGAAAAAGAGAAAAAGAATTTGGTTACTTCTTTAGAGATTGATCACGCTGTACTTAAAGTGACTTGTGAAAATCATGAGGCTGAAGTGGAAGAATTGAAGAGTGAGGTGGCTTTAAAGTATGCTTCTGGGTTTGATAAAGCTATTATGCAGGTCCGTTTCCTATATCCTAACTCAAATTTGGAGGAGACCGGACCTTTTAAAGTTTTGCAAGATGGAAAGTTGGTCGATCAGTTTCCTAATTCTAACTAG 3783 0.4126 MFSRKGWVSLIRIPGKSILSLFTSSYKNFKTKYFRVKNSQDFPELIKDASGGYKFPLYWSSNPSPISVTDRSSLTPIERVHASFLETFPTLSSSDIINLGNKPVALRQYLAKMSPMTDADLLAYYTKKNKAKKTNATNGKDQAPENKELTEQSESTIKEIFTKKRKKMSENSAEVSTSNLSRPSTQKSFSKTSEIEQWQSVLQECENKVVGEASSLRDKQFPISDLIDTYLTNNKDVEKVKNLNSEKLCQALETYALQTTFLAQSLEKRWEQHEKDFETLKRSNEELKGQLDKAKKAEKDLDDLRKKFHAQELENIVKDLKFKEMEEEKKNLVTTLETDRDELKVACENLEAEVEELKGEVALKYASGFDKAIMQFTGLHHGFFCRPTYSHAQNKVQPIKASVAALPFPLFQPPKVEESTSELEPADPDFYRIGYVRSMRAYGIDFKEGPDGFGVYASKDVEPLRRPRVIMEIPLELMLTISKKLPWMFFPDIIPIGHPIFDIINSTNPEEELLELQDPNLASTMRSQQQRALEFWEKNWHSGVPLKIKRLARDPQRFIWAVGIAQSRCINMHMRVGALTQNANMLVPYADMLNHSFEPNCFFFIGVLRTGCLNDMFLICILKFNIHFKCEGCEQKVKKLLQKIDAVHDPRVTNRPKISTIHLLQKNLLYPITCLKLQGDFFALNWLLKLHHLVTFDFTISFFFFNLSDWEMLLVKKKKKIVSCSSSSENYDWANLEVRRLSSFYKSPESVKKLRSQLSLSYSKENAGKIIVEACRMSEPVCFNPPPGALKEYFYMYETFFSRLNIKLPFSDFECDVLRTLNVAPTQLHPNSWAYIRAFILLCRNYKINPSACLFFCFFKWKLSRKGWISLNGIPRKCMFSLFTSSYRRFKTKYFRVKNRQDFPELIRDASGGYKFPLYWSSNPSLISVTDRSSLTPVERIDASFLEKFPILSSSDIINLENKPDALRQYLAKMSSMTDADLLAYYTKKNKATKGKDQAPGSHEQSEQSESTVWEILTKKRKRTSENVAEVSASNLSTHKSSIKSCEIEHWQLVLHECENKGVGEALTLWDKQFPIPDIIDTCLTKSKDVEKVKKLGPQQLSRALETYTVQSAFLARSLEKELEQHEKDFETLKRSNGELKGQLDKAKKSEKDLDDLRKKLDTLELENIEKDLKIKELEKEKKNLVTSLEIDHAVLKVTCENHEAEVEELKSEVALKYASGFDKAIMQVRFLYPNSNLEETGPFKVLQDGKLVDQFPNSN* 1261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4059 1260 Coils Coil 1116 1186 - -
Lja1g4059 1260 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 384 512 - -
Lja1g4059 1260 Pfam SET domain 452 607 IPR001214 GO:0005515
Lja1g4059 1260 Gene3D set domain protein methyltransferase, domain 1 485 615 - -
Lja1g4059 1260 CDD SET_LSMT 443 603 - -
Lja1g4059 1260 PANTHER PROTEIN PLASTID TRANSCRIPTIONALLY ACTIVE 14 511 603 - -
Lja1g4059 1260 Coils Coil 1193 1220 - -
Lja1g4059 1260 Coils Coil 263 367 - -
Lja1g4059 1260 Pfam Putative gypsy type transposon 805 861 - -
Lja1g4059 1260 PANTHER PROTEIN PLASTID TRANSCRIPTIONALLY ACTIVE 14 384 512 - -
Lja1g4059 1260 MobiDBLite consensus disorder prediction 172 189 - -
Lja1g4059 1260 MobiDBLite consensus disorder prediction 144 171 - -
Lja1g4059 1260 SUPERFAMILY SET domain 451 609 IPR046341 -
Lja1g4059 1260 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 511 603 - -
Lja1g4059 1260 MobiDBLite consensus disorder prediction 132 189 - -
Lja1g4059 1260 MobiDBLite consensus disorder prediction 993 1012 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4059 Lja-Chr1 51407487 51418869 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lja1g4059 SET 2.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4059 - - lja:Lj1g3v1784380.2 871.307