Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4043 ATGGAGAATGATATGTACATTGCACATTCCACCTCAAATCCACTCTATTCATTTGACCGTAACAACCAATCCAACATCATGAGTGGAATTTCAATGCTTCATGGAGAGCAAAGTGGACCTATAAGCCATGCTGATGTTTGCTTCATAAATCCTGCAAGTTATTCTGACCCTAGTTCATTAGTTACATCACAAGGAAAGAGAACTGTGGTAGATAGCTCAAATCCCATCAGTGTGAACACTGAGTTTCAAGAGCATTTTGCTGGAGGAATTCCTATTACTCATGCTTCACTTGCAGCCCTTCTTTCTGCAAGAATTGGTCTTGAAGAAAATTTGGAAAATTCAGCAACTTTGCCTCCTTCACTCTGCTCCATGGGAGCACTAGGCCAATTCTTCAATAATTGGCAAGGCACTTCAACCCCTTTTACCTTTGAGGACCCTAGTTATAATGAAGTACCTAGTAGCAGCAAGTGGAATAACAAGGTACCTTATTCCTCCATTGGAAACCTGGATCCAGATGAATGGGCAGCAGCATCAAATGTTGCAAACATGGCCGATCATTCGTACCGTTCATCGTCAACCTTTAGTAATGAACTTTCTCTAAGTCTTGCAACATCCACAAGCCCTTGCTCTGATGTGACTCAATGCATGGATGGAACTGTGTCAGGGTTGGAGCAAGCCACCTGCAGCAGCAGTAGGGAACTTTCTATGGGTTTGAGTTGTGGCAAATATGTACAGTTTTCATCAGAAGTATTGAGATCTAGATATCTTGTTGGAATTCAAGAGATACTTGCTCAAATTGCTACATATTCATTTGAAAACCTGGAACAGATCAATTGTTCAGCTGCTGGTAATAGAGAAGGTGGAAACAAGTCAACTTCTGCTTTCTCACCAGGGAGAAGGTCATTGATAAATCAAAATGCAAATTCTATGTCTGAAGCAGAAGCTCATGCAGAATCTCCTTTGCACAGGCATGCAGCTGAATCAAAGAAATCCCAACTGTTGACACTTCTACAACTGGTGGACAATCGATATAACCAGTGTTTGGATGAGATACACACTGTTGTATCTGCATTCCATGCTGCTACAGAGCTTGACCCACAAAAACATGCACATTTTGCTCTTCAAAGGGTCTCTATCCTATACAAGGACTTGCGAGAGAGGATTAGCAATCATATTCTTGCCATGGGATCAAATTTCAACAACTCGTGTTCAGACGAGAAGGAATGGTCTGTTGAAACCTCATTCCTTGAAAAGCAATGGGCTCTCCAGCAGCTGAAAAGAAAAGACCAGTTGTGGAGGCCCCAAAGAGGCTTGCCAGAAAGATCTGTCTCAGTTTTAAGGGCTTGGATGTTTCAGAATTTCCTTCATCCGTATCCTAAAGATGCAGAGAAGCACTTACTTGCAGTTAAAAGTGGGTTGACAAGAAGCCAGGTATCCAATTGGTTTATAAATGCTCGTGTTCGCCTGTGGAAACCTATGATTGAGGAAATGTACAATGAAATGAACAAAAGAAAGGCGTGTCGAAATGAAGGGATGGAGAGCAGCCACGGAAACAGGATTAGTATGAGCCATCTATGGTTTGATGACAATTGA 1593 0.4193 MENDMYIAHSTSNPLYSFDRNNQSNIMSGISMLHGEQSGPISHADVCFINPASYSDPSSLVTSQGKRTVVDSSNPISVNTEFQEHFAGGIPITHASLAALLSARIGLEENLENSATLPPSLCSMGALGQFFNNWQGTSTPFTFEDPSYNEVPSSSKWNNKVPYSSIGNLDPDEWAAASNVANMADHSYRSSSTFSNELSLSLATSTSPCSDVTQCMDGTVSGLEQATCSSSRELSMGLSCGKYVQFSSEVLRSRYLVGIQEILAQIATYSFENLEQINCSAAGNREGGNKSTSAFSPGRRSLINQNANSMSEAEAHAESPLHRHAAESKKSQLLTLLQLVDNRYNQCLDEIHTVVSAFHAATELDPQKHAHFALQRVSILYKDLRERISNHILAMGSNFNNSCSDEKEWSVETSFLEKQWALQQLKRKDQLWRPQRGLPERSVSVLRAWMFQNFLHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVRLWKPMIEEMYNEMNKRKACRNEGMESSHGNRISMSHLWFDDN* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4043 530 Pfam Homeobox KN domain 449 488 IPR008422 GO:0003677|GO:0006355
Lja1g4043 530 CDD homeodomain 432 493 IPR001356 GO:0003677
Lja1g4043 530 Pfam Associated with HOX 250 389 IPR006563 -
Lja1g4043 530 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 16 524 - -
Lja1g4043 530 PANTHER HOMEOBOX PROTEIN ATH1 16 524 - -
Lja1g4043 530 SUPERFAMILY Homeodomain-like 434 501 IPR009057 -
Lja1g4043 530 SMART HOX_1 432 496 IPR001356 GO:0003677
Lja1g4043 530 ProSiteProfiles 'Homeobox' domain profile. 429 492 IPR001356 GO:0003677
Lja1g4043 530 SMART prehox3 244 390 IPR006563 -
Lja1g4043 530 Gene3D - 435 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4043 Lja-Chr1 51232070 51234386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4043 185 505 Homeobox Transcription Factor Family AT4G32980 54.180 1.39e-103 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Lja1g4043 POX 5.2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4043 - - gmx:100820354 736.873
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4043 1 51232070 51234386 Lja1g4043 1 51232070 51234386 ECH
Lja5g3019 5 59151011 59154622 Lja1g4043 1 51232070 51234386 PCT