Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4042 ATGGCAAGGAAATGCACATATTGTGGAAACATGGGTCACAATTCAAGGACTTGCAACAACACTAGACATCTAAGGCTTTTTGGTGTGCAACTTGACGTGTCTTCTTCTTCATTATCACCACTCACAAGTTCTTATTCACCTTCATATCTCACCATGCAAAGAAGTTTCAGTTTGGACTACTTGTTTGCTCCACAGTCTTCTTTATCTGCACACTCTTCCTCTTCCTCCTCCTCGGCTCCGCCACAGCTTGATGCTACCGAAAAATCAGATAACTACTTAGCTAGTAGTGCCAATGTCCTCACATCAACAATCCAAGGCAAGAAAAAAGGGGTGCCGTGGACAGAGGAAGAGCACAGGGTATTTCTTGTGGGGCTTGAGAAGCTGGGGAAGGGTAACTGGAGAGGCATATCTAAAGACTTTGTGAAAACAAGAACACCAACCCAAGTGGCCAGTCATGCACAAAAACTTTTCCTCAGTCTGTCTCATAAAAGCTTCAAAAAAAGAAAAAGCCATCCCACCTTGCTTGATGTGACTTTTGGTCCACTTGGGTTCCCATCTGGAGGAAAAACTGATAAGTTGATTTCAAATGATATCAACATGAGTCTCTTTAGTAGCAACCAAAATTTTCTTTCTGAATGGCTTTGGCATCCTCATGATCCACTGCTGAAATGGCCTAGTACCACTTCAACGAATTCAAGTCCTCAGAGCACAGCCCCTGATTTAGAACTAAAACTTGCAATTACTCCCATGATGCCATTGTAG 762 0.4291 MARKCTYCGNMGHNSRTCNNTRHLRLFGVQLDVSSSSLSPLTSSYSPSYLTMQRSFSLDYLFAPQSSLSAHSSSSSSSAPPQLDATEKSDNYLASSANVLTSTIQGKKKGVPWTEEEHRVFLVGLEKLGKGNWRGISKDFVKTRTPTQVASHAQKLFLSLSHKSFKKRKSHPTLLDVTFGPLGFPSGGKTDKLISNDINMSLFSSNQNFLSEWLWHPHDPLLKWPSTTSTNSSPQSTAPDLELKLAITPMMPL* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4042 253 PANTHER TRANSCRIPTION FACTOR KUA1 1 176 - -
Lja1g4042 253 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 1 176 - -
Lja1g4042 253 CDD SANT 112 157 IPR001005 -
Lja1g4042 253 ProSiteProfiles SANT domain profile. 113 161 IPR017884 -
Lja1g4042 253 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 108 158 IPR006447 GO:0003677
Lja1g4042 253 Gene3D - 111 162 - -
Lja1g4042 253 SMART sant 109 159 IPR001005 -
Lja1g4042 253 ProSiteProfiles Zinc finger CCHC-type profile. 3 18 IPR001878 GO:0003676|GO:0008270
Lja1g4042 253 ProSiteProfiles Myb-like domain profile. 105 157 IPR001005 -
Lja1g4042 253 SUPERFAMILY Homeodomain-like 106 161 IPR009057 -
Lja1g4042 253 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 107 161 IPR017930 -
Lja1g4042 253 Pfam Myb-like DNA-binding domain 112 156 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4042 Lja-Chr1 51223723 51225135 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lja1g4042 Myb_DNA-binding 2.1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4042 - - aprc:113866246 231.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4042 1 51223723 51225135 Lja1g4042 1 51223723 51225135 ECH