Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4034 ATGAAGGGAATCATAGTCAAAGAGGAAGAATCAGTGGCATTTGTTGCAGCTGGTTCAACATCATGTGCATCTTCTTCTTCATCTTCAAGCTCAAACCTCTCTCCACAACCCATGGAAGGGTTACACGATGTGGGTCCTCCTCCATTTCTCACCAAGACCTATGAAGTGGTGGAAGATCCTTCCACTGACTCCATTGTTTCCTGGAGCAAAGCTCGCAACAGCTTCGTCGTCTGGGACTCTAGCAGATTCTCCACCACCATTTTACCTCGTTACTTCAAGCACAACAACTTCTCCAGCTTCGTTCGTCAGCTCAATACCTATGGTTTTAGAAAAGTTGATCCTGATCGATGGGAATTTGCAAACGAGGGGTTTTTGGCAGGGCAGAGGCATCTGTTGAAGACTATAAAGAGAAGAAGAAATGTGACAGTGACACAGTCACAGGGAATGCAGCAAGGGGCTTGTATTGAGTTGGGGGAGTATGGGCTGGAAGGTGATATTGACAGGTTGAGGAGAGACAGGATGGTGTTAATGGCAGAAATTGTGAAGTTGAGGCAGCAGCAGCACAATTCTAGGGAGCAATTGACTGCTATGGAGGCTAGATTGCAAACCACTGAGAAGAAACATCAGCAGATGATGACATTCCTTGCCAAGGCTCTCAGTAATCAGTCTTTTATGCAACAATTGGCACACAGGAATGCTCAGAACAAAGAATTGCAGGGTGGTCAGATCAGGCGAAAACGGAGACTGACTGCTAGCCCAAGTGTGGAGAATATGCAACAAGACCCTGTGACCATGATGGTGCCAATTGAATCAGTGGTGGATTTTACAAGTCAAGAACAAGAAGGGTTGGCTACTGTTGAGCCTGAGATGGGGTCAATTTTCTCAGCTGCTTATGATAATGAATCAAGCAGTGAAATCAAAGACCCAATATCAAGTTCAGTTCCTGCTGCAAGAGGGAGTAATTTGAGTTCAGTCAGTGATGCTATGTGGGAGGACTTGCTGAACCAGGACCTGGTTGCTGGGAACCCTGAGGATGAGGTTGTAATTGGTGATCTTTCCCAAATTGATGCACCATTGGAGGATTTGGTCTCAAATCCTGATGATTGGACTGAGGATTTGCAAGACCTTGTGGATCATATGGGTTATCTTGGGTCAAAACCTTAG 1164 0.457 MKGIIVKEEESVAFVAAGSTSCASSSSSSSSNLSPQPMEGLHDVGPPPFLTKTYEVVEDPSTDSIVSWSKARNSFVVWDSSRFSTTILPRYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLAGQRHLLKTIKRRRNVTVTQSQGMQQGACIELGEYGLEGDIDRLRRDRMVLMAEIVKLRQQQHNSREQLTAMEARLQTTEKKHQQMMTFLAKALSNQSFMQQLAHRNAQNKELQGGQIRRKRRLTASPSVENMQQDPVTMMVPIESVVDFTSQEQEGLATVEPEMGSIFSAAYDNESSSEIKDPISSSVPAARGSNLSSVSDAMWEDLLNQDLVAGNPEDEVVIGDLSQIDAPLEDLVSNPDDWTEDLQDLVDHMGYLGSKP* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4034 387 ProSitePatterns HSF-type DNA-binding domain signature. 88 112 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja1g4034 387 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 21 338 - -
Lja1g4034 387 PRINTS Heat shock factor (HSF) domain signature 87 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja1g4034 387 PRINTS Heat shock factor (HSF) domain signature 100 112 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja1g4034 387 PRINTS Heat shock factor (HSF) domain signature 49 72 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja1g4034 387 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Lja1g4034 387 Pfam HSF-type DNA-binding 49 138 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja1g4034 387 Gene3D - 42 139 IPR036388 -
Lja1g4034 387 MobiDBLite consensus disorder prediction 21 44 - -
Lja1g4034 387 Coils Coil 166 207 - -
Lja1g4034 387 SUPERFAMILY "Winged helix" DNA-binding domain 45 138 IPR036390 -
Lja1g4034 387 MobiDBLite consensus disorder prediction 21 37 - -
Lja1g4034 387 SMART hsfneu3 45 138 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja1g4034 387 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 21 338 IPR027725 -
Lja1g4034 387 MobiDBLite consensus disorder prediction 235 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4034 Lja-Chr1 51119098 51123012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4034 35 387 HSF AT2G26150 51.397 6.35e-125 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lja1g4034 HSF_DNA-bind 1.5e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4034 K09419 - gmx:100794605 544.658