Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4032 ATGCCTTCCGAATTTGAGGAAAAACTTCCGCCTCCTGACAAGCCAAGAATAATAGTTGATAATCCTGACCAATCAACAAAGCTTGTAGAGAGCCAAGAAGTTGGCCCTTCTACTGCAGCTGCGTCTTCCAAAAGTCGCCCACTACCATGCTTGTGTGCTGGGAGGGACTGCTGGGGCACATTCTGTAAGTGCTTTACCTATGGATTCTATTGTGGTCAAGACTGTCAGTGCGGCGATGGATGTTTAAATACCCATAAAGTACAGGAGGAATTTCATTTCGATAGGGGACTCGTGATTAAATGGAGCAATTATAGAGGAAGCTTGTGTAGGTGCAGCAATAAAACCCACTGTAGTAACAATTATTGTGGGTGTTTCAAGCTGAATCAGAGATGCCTAATAGGATGTAAGTGTGTCGGATGTACGAATCCCTACGGTGAAAAGTGA 444 0.4437 MPSEFEEKLPPPDKPRIIVDNPDQSTKLVESQEVGPSTAAASSKSRPLPCLCAGRDCWGTFCKCFTYGFYCGQDCQCGDGCLNTHKVQEEFHFDRGLVIKWSNYRGSLCRCSNKTHCSNNYCGCFKLNQRCLIGCKCVGCTNPYGEK* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4032 147 PANTHER - 36 145 - -
Lja1g4032 147 MobiDBLite consensus disorder prediction 1 47 - -
Lja1g4032 147 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 109 142 IPR005172 -
Lja1g4032 147 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 49 84 IPR005172 -
Lja1g4032 147 PANTHER TESMIN/TSO1-RELATED 36 145 IPR028307 -
Lja1g4032 147 ProSiteProfiles CRC domain profile. 46 145 IPR005172 -
Lja1g4032 147 MobiDBLite consensus disorder prediction 24 44 - -
Lja1g4032 147 SMART CXC_2 45 87 IPR033467 -
Lja1g4032 147 SMART CXC_2 104 146 IPR033467 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4032 50 145 CPP Transcription Factor Family AT3G04850 28.346 1.20e-07 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Lja1g4032 TCR 7.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4032 K21776 - lja:Lj0g3v0336749.1 155.221