Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4023 ATGTCCTCCGGCGCTCCGCCGCAGCAGCCAACTGGCGCTTCACCGCACAACATCACAATGGTCGCTGTTGACAAAGACAAGAACAGTGCCTACGCCTTCCGTTGGGCGGTTAATCATCTCGAAAACCCTCTCATCATCGCCGTCCATGTCAAGCATAAAAACTTTCCTAATCATCATGTCACCAATGTGTTTCCACCTGACGAGGAGGATGTAGCCTATGTTTTCAATAACTTGCGTGGATTGTGTAATCGGAAAGCTATCACGGTGAAAGAAGCGGTAGTTGATGATCATGATGTTGTGAGAGGACTTTTAGAATTTGCAAAAAGGAATCTCATACAAAGTATTGTCGTCGGTGCATCCACCAAGAACTCTTTGACAAGTCTAAAGAAATTGAAAGGTAATCATGATATACCAACGGCCATGATAAAAGTGGCCCCGGATTATTGCAATGTGTACATAATTTCTAAACTCAAGATTATGTCAGCTCGATCGGCGATGCGACAGTTTGTTACTCCAAAACAACAAGCTTTTCAGGCAAGCCTACCTGGTGAATCAGAAAATTCAGTGAGGGGAGTGCCACCTAGAAGTGGGAGTAACGACGTGTTGGACGGAAGGACTTTTGAGAGCAATACTCCAGTTAGATTGCATGCTCGAGAGAGGCCAAGGAGTGCTGGAAATATGCCGTCACTGGACAACATTGATATGCCCCATCGTCGACATTGGTCAATGGATGAAAGAGACATGTCAGGGTTTGGGCCAATTGATGTAACTAAGCTAGATCTGGATTCAACTATTACATCAGATACACACACGCCTACTAAAAAAAAAGATACACACGGGACATCAGCCTCAAGAGATCTCGAAGCTGAGATGAGAAAATTGAGGCTTGAACTGAAGCAGACTATGGACATGTACAGCTCAGCTTGCAAGCAAGCAATCTCAGCCAAAAACCAGGCTGAACAGATTCGTCGATGGAAACTGGAAGAGGAACGGAAGGTTGAAGAAGTTAGGATGTCTCAAGAGGCTGCTCTTGCAATAGCAGAAAAGGAAAAGGCTAGAGCCAAAGCTGCACTGGAAGCAGCTGAGGAAGCCAAGAGGAAAGCTGAACAGGAAGCACATAGAAGAATGGAGGCAGAGATGAAGGCCAGGAAAGAGGCAGAAGAGAGGGATCGAGCATTAAATTCGTTGACTCAAAATGATCATCGATATAGAAAATACACCATAGAGGAGATTGAAGAAGCTACTGAACACTTCTCCTCGTCAAGGAAAATAGGCGAAGGTGGATATGGACCTGTGTACCAAGCCCAACTTCATCACACCCCAGTTGCAATCAAAATTTTAAATCCTGCTGCTTCTCAGGGAAGGAGGCAGTTCAATCAAGAGGTTGAGGTTCTATGCTGCATTAGACATCCGAATATGGTTCTGCTCCTTGGTGCCTGTCCTGAACACGGGTGCTTGGTGTATGAATACATGGACAATGGTAGCTTAGAGGATAGATTGTTTCGGAAAAATAACAGCCGTCCTATTTCATGGAAGAAAAGGTTCCAAATAGCTGCTGAGATTGCAACCGCACTCCTTTTTCTTCACCAAACAAAGCCAGAGCCAATTGTGCACCGAGACCTCAAACCAGCAAACATTCTATTAGACAGGAACTACGTGAGTAAAATCAGTGACGTCGGTCTGGCAAGATTAGTCCCACCTTCTGTTGCTGATAATGTCACACAATATTACATGACTTCCGCTGCCGGGACCTTTTGTTACATTGATCCTGAGTATCAGCAAACAGGATGTTTGAATACGAAATCAGATATATATTCATTGGGGATACTGCTGCTGCAGATAATCACAGCGAAGCCTCCCATGGGTCTTACTCACCATGTTAAGAGGGCAATTGAAAAGGGCAAGTTTTTGGAGATACTTGACCCTGAGGTGACTGATTGGCCAGTTGAAGAAGCTCTATCTTTTGCCAAATTAGCATTGAGCTGTGCAGAACTCAGTAAGAAGGACAGGCCGAATCTCGCAACAGTTGTTTTGCCAGAGCTTAACCGATTAAGAGACTTTGAAAGTACTTTAGACCATCAAGAAGTTATTAGCAGTGATGATAACGACCATAGCCATGAAGCACGCCCTTTCTACTGCTAA 2142 0.4463 MSSGAPPQQPTGASPHNITMVAVDKDKNSAYAFRWAVNHLENPLIIAVHVKHKNFPNHHVTNVFPPDEEDVAYVFNNLRGLCNRKAITVKEAVVDDHDVVRGLLEFAKRNLIQSIVVGASTKNSLTSLKKLKGNHDIPTAMIKVAPDYCNVYIISKLKIMSARSAMRQFVTPKQQAFQASLPGESENSVRGVPPRSGSNDVLDGRTFESNTPVRLHARERPRSAGNMPSLDNIDMPHRRHWSMDERDMSGFGPIDVTKLDLDSTITSDTHTPTKKKDTHGTSASRDLEAEMRKLRLELKQTMDMYSSACKQAISAKNQAEQIRRWKLEEERKVEEVRMSQEAALAIAEKEKARAKAALEAAEEAKRKAEQEAHRRMEAEMKARKEAEERDRALNSLTQNDHRYRKYTIEEIEEATEHFSSSRKIGEGGYGPVYQAQLHHTPVAIKILNPAASQGRRQFNQEVEVLCCIRHPNMVLLLGACPEHGCLVYEYMDNGSLEDRLFRKNNSRPISWKKRFQIAAEIATALLFLHQTKPEPIVHRDLKPANILLDRNYVSKISDVGLARLVPPSVADNVTQYYMTSAAGTFCYIDPEYQQTGCLNTKSDIYSLGILLLQIITAKPPMGLTHHVKRAIEKGKFLEILDPEVTDWPVEEALSFAKLALSCAELSKKDRPNLATVVLPELNRLRDFESTLDHQEVISSDDNDHSHEARPFYC* 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4023 713 SMART serkin_6 418 681 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g4023 713 MobiDBLite consensus disorder prediction 263 287 - -
Lja1g4023 713 Gene3D Transferase(Phosphotransferase) domain 1 491 706 - -
Lja1g4023 713 Gene3D Phosphorylase Kinase; domain 1 388 490 - -
Lja1g4023 713 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 20 127 - -
Lja1g4023 713 Coils Coil 284 304 - -
Lja1g4023 713 MobiDBLite consensus disorder prediction 177 206 - -
Lja1g4023 713 Gene3D HUPs 12 131 IPR014729 -
Lja1g4023 713 Coils Coil 337 389 - -
Lja1g4023 713 ProSiteProfiles Protein kinase domain profile. 418 681 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g4023 713 PANTHER KINASE WITH ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE DOMAIN-CONTAINING PROTEIN 18 701 - -
Lja1g4023 713 MobiDBLite consensus disorder prediction 269 287 - -
Lja1g4023 713 CDD STK_N 21 156 - -
Lja1g4023 713 ProSitePatterns Serine/Threonine protein kinases active-site signature. 536 548 IPR008271 GO:0004672|GO:0006468
Lja1g4023 713 PANTHER OS02G0152300 PROTEIN 18 701 - -
Lja1g4023 713 Pfam Protein kinase domain 419 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g4023 713 Pfam Universal stress protein family 20 126 IPR006016 -
Lja1g4023 713 SUPERFAMILY Protein kinase-like (PK-like) 398 677 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4023 Lja-Chr1 50966716 50971564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4023 91 687 Receptor kinase-like Gene Family AT5G12000 56.039 0.0 667
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Lja1g4023 PK_Tyr_Ser-Thr 1.6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4023 - - lja:Lj3g3v0420630.1 1053.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4023 1 50966716 50971564 Lja1g4023 1 50966716 50971564 ECH