LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja1g4021	ATGGAGGATCTCAAGGAAGAAGGGAACGGAGGAGAGGAGGTGCTAGGGTCTACCTTGACCATGGAGAAGGTTGCTGCAGCGAAGAAGTTCATCGAGAATCACTACAGGGTTCAGATGAAGAACATTCAGGATCGGAAGGAGAGGCGTTGGATTTTAGAACGAAAGTTAGCTTCTTCAGATGTGCCAAATGAGGAACGGATCAACCTCATTAAAGATTTAGAGCGGAAGGAGACGGAATATATGAGATTGAAAAGGCACAAAATTTGTGTCGATGATTTTGAACTTCTGACCATCATTGGAAGGGGGGCCTTTGGGGAGGTTAGGCTGTGTCGGGAGAAGAAATCTGGAAATATTTATGCCATGAAAAAGCTGAAGAAATCTGAGATGCTTAGGAGAGGCCAGGTCGAACATGTTAGAGCTGAGAGGAACTTGCTAGCCGAAGTTGCCAGTCATTGCATTGTGAAGCTTTACTACTCATTTCAGGATGCTGACTACTTGTATTTAATTATGGAGTATCTTCCTGGGGGTGACATTATGACTCTTCTGATCAGGGAAGACACCTTACATGAAAATGTTGCTAGATTTTACATTGCTCAGAGTGTTCTGGCCATAGAGTCTATTCACAAGCACAATTACATTCACAGAGATATTAAACCTGATAACCTACTTCTGGATAAAAATGGTCACATGAAGCTGTCTGATTTTGGCCTGTGTAAGCCTCTTGATTGCATTACCTTGCCTACACTGCATGAAAATCAGACTATGGATGGTGAAATGGCAGAGCCAATGGATATCGATGATGCGGACAATCGGAGCAGCTGGAGAAGTCCACTTGAACAGCTTCAGCATTGGCAAATGAACAGGAGGAAGTTGGCATTTTCAACAGTGGGGACACCAGACTACATTGCTCCTGAAGTACTTTTGAAGAAAGGATATGGGATGGAATGTGATTGGTGGTCACTTGGAGCTATTATGTATGAAATGCTGGTTGGTTACCCTCCATTTTACTCCGATGACCCAATAACCACATGCAGAAAGATTGTTCACTGGAGGAATCATTTAAGATTTCCAGAAGATTGCCGGTTAACTCTTGAGGCGAAGGATCTAATCTACAAATTGCTGTGTGATGTTGATCATAGGTTAGGGACTAGAGGGGCACCTGAAATCAAGGCTCATCCTTGGTTTAAGGGTGTTGAGTGGGATAAAGTGTATGAAATGGAGGCAGCATTTAAACCACAAGTCAATGGGGAGCTGGATACCCAAAACTTCATGAAATTTAATGAGGTAGATCCACCAGCGGCAGGAAAAAGTGGATCCGGATCCTCAAGAAAGATGCTAACTCCCAAAGATATAAACTTTGTTGGTTACACTTACAAGAACTTTGATGCGGTAAAAGAAGGGCTGCGTCAGTCTTTAGGTGATTCCATGCAACAATATGCTTCTAATCGGGCAGCTGAGGAAGCGGGTTTACAAATGTTGGCATCATCCGGTGATCCGATGATGCCATAA	1509	0.4341	MEDLKEEGNGGEEVLGSTLTMEKVAAAKKFIENHYRVQMKNIQDRKERRWILERKLASSDVPNEERINLIKDLERKETEYMRLKRHKICVDDFELLTIIGRGAFGEVRLCREKKSGNIYAMKKLKKSEMLRRGQVEHVRAERNLLAEVASHCIVKLYYSFQDADYLYLIMEYLPGGDIMTLLIREDTLHENVARFYIAQSVLAIESIHKHNYIHRDIKPDNLLLDKNGHMKLSDFGLCKPLDCITLPTLHENQTMDGEMAEPMDIDDADNRSSWRSPLEQLQHWQMNRRKLAFSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPITTCRKIVHWRNHLRFPEDCRLTLEAKDLIYKLLCDVDHRLGTRGAPEIKAHPWFKGVEWDKVYEMEAAFKPQVNGELDTQNFMKFNEVDPPAAGKSGSGSSRKMLTPKDINFVGYTYKNFDAVKEGLRQSLGDSMQQYASNRAAEEAGLQMLASSGDPMMP*	503

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja1g4021	502	PANTHER	SERINE/THREONINE-PROTEIN KINASE	13	480	-	-
	Lja1g4021	502	PANTHER	AGC (CAMP-DEPENDENT, CGMP-DEPENDENT AND PROTEIN KINASE C) KINASE FAMILY PROTEIN	13	480	-	-
	Lja1g4021	502	SMART	serkin_6	93	395	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lja1g4021	502	CDD	STKc_NDR_like	91	459	-	-
	Lja1g4021	502	Gene3D	Phosphorylase Kinase; domain 1	414	424	-	-
	Lja1g4021	502	Gene3D	Phosphorylase Kinase; domain 1	91	176	-	-
	Lja1g4021	502	Pfam	Protein kinase C terminal domain	414	458	IPR017892	GO:0004674\|GO:0005524\|GO:0006468
	Lja1g4021	502	SUPERFAMILY	Protein kinase-like (PK-like)	90	438	IPR011009	-
	Lja1g4021	502	Pfam	Protein kinase domain	94	241	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lja1g4021	502	Pfam	Protein kinase domain	287	395	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lja1g4021	502	ProSiteProfiles	AGC-kinase C-terminal domain profile.	396	468	IPR000961	GO:0004674\|GO:0005524\|GO:0006468
	Lja1g4021	502	SMART	pkinase_C_6	396	460	IPR000961	GO:0004674\|GO:0005524\|GO:0006468
	Lja1g4021	502	Gene3D	Transferase(Phosphotransferase) domain 1	294	413	-	-
	Lja1g4021	502	Gene3D	Transferase(Phosphotransferase) domain 1	177	242	-	-
	Lja1g4021	502	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	212	224	IPR008271	GO:0004672\|GO:0006468
	Lja1g4021	502	ProSitePatterns	Protein kinases ATP-binding region signature.	99	122	IPR017441	GO:0005524
	Lja1g4021	502	ProSiteProfiles	Protein kinase domain profile.	93	395	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja1g4021	Lja-Chr1	50947411	50958584	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja1g4021	1	501	AGC Kinase Gene Family	AT4G33080	78.431	0.0	811

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_NDR	Lja1g4021		Pkinase	1.3e-42	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja1g4021	K08790		-	gmx:100815717	947.192

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja1g4021	1	50947411	50958584	Lja1g4021	1	50947411	50958584	ECH