Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4020 ATGTCGACCACGGTGGCATTTCCATCAGGAGTAGGTAATTCAGTGTGTGATAAGCAAACTTACATGGATGTATCCAGAATTAAGCTGATGGCAGATTCAGGATTGTTATCCATTTCTACTGAGACTTCTATAAGTTCTGATGAAGTTCATAATGGTAGCTATGAGGATGAAATTGGTATTGGTATTACAGCAATAACACCCTCAAAACAGGGAAGTGAAGGAGAAATTCCATTGTTGAATTTGATATCTCGAAACATAAGCACTTCTGTTGTTGGTGATGAAGTTTTAAATCCAGAAATTGAGGAGGAGGAGGATTCGATGTCATTGGAGGGTGATCCAAACCTTGATATCTCTCCTCGTTCAGTTGCGAGTGAGAACAGTAGTATTTTTGGAGATGAGTTAATTAGTTCTGAGATTACTTCAGATTTTGGGATAAGGAATTCCATAGACGCAGAGAAGAGCATCTCTGCTGTAAGAATTATTGCTATGGCTGCTGATTTGGACAAGTCAAATGTGGAGGCAGATATTATTATGAGTGAACCCCTTGCTGTGGCAGTGAGCCTCGAAGAAGAAACAGGAGTTAGATCTGCCCCGGTGCCTGCTACAGCTCTTCATCAACCACCTCTTGAAAAGGAGGTGTGTGGAACTGTTGGCCGTAGTGTTTTTGAATTGGATTGGACTCCACTTTGGGGATTTACAACTTTGTGTGGAAAAAGACCAGAGATGGAAGATGCAGTTGCTACTGTGCCTCGGTTTATGAAAATTCCTATTGAAATGCTAATTGGTGACAGGATATTTGATGGAATGAACAAGTGTTTCCGTCAGCAGACAAGTCATTTCTATGGAGTCTATGATGGCCATGGTGGCTCTCAGGTGGCAAATTTTTGTCGTGATCGTATGCATTTGGCTTTGGCTGAGGAAATAGAGCATGTCAAGGAAGGTCTATTAATTGGAAGTATCAATGATTGTCAAGATCAGTGGAAAAAGGCTTTCACCAATTGTTTTCTGAAGGTTGATGCTGAAGTTGGAGGGAAAATTAATAGTGAACCTGTTGCCCCAGAAACTGTTGGATCCACTGCTGTTGTTGCTGTTGTCTGTTCATCTCATATCATAATTTCAAACTGTGGTGATTCAAGAGCAGTTCTATGTCGTGGCAAAGAACCCATAGCGTTATCTGCTGATCATAAACCTAATCGAGAAGATGAATATGCTAGAATTGAGGCAGCTGGAGGCAAGGTGATACAATGGAATGGTCATCGCGTATTTGGTGTTCTTGCAATGTCAAGGTCTATTGGTGATAGATATTTGAAGCCATGGATTATTCCTGATCCAGAAGTTACATTTCTTCCTCGTGCAAAAGATGACGAATGTCTCATTCTTGCCAGTGATGGCCTGTGGGATGTCATGACAAATGAAGAGGCATGTGACCTAGCTCGGAGACGCATACTTTTCTGGCACAAGAAAAATGGCTTGTCCATGTCCTCAGAAAGGGGAGAAGGAATTGATCCCGCTGCACAAGCAGCTGCGGAGTTCCTATCAAACCGTGCTCTTCTGAAAGGAAGCAAAGATAACATCACCGTGATTGTAGTTGATTTGAAAGCCCAGCGAAAATTTAAGAGTAAATCATAA 1629 0.4174 MSTTVAFPSGVGNSVCDKQTYMDVSRIKLMADSGLLSISTETSISSDEVHNGSYEDEIGIGITAITPSKQGSEGEIPLLNLISRNISTSVVGDEVLNPEIEEEEDSMSLEGDPNLDISPRSVASENSSIFGDELISSEITSDFGIRNSIDAEKSISAVRIIAMAADLDKSNVEADIIMSEPLAVAVSLEEETGVRSAPVPATALHQPPLEKEVCGTVGRSVFELDWTPLWGFTTLCGKRPEMEDAVATVPRFMKIPIEMLIGDRIFDGMNKCFRQQTSHFYGVYDGHGGSQVANFCRDRMHLALAEEIEHVKEGLLIGSINDCQDQWKKAFTNCFLKVDAEVGGKINSEPVAPETVGSTAVVAVVCSSHIIISNCGDSRAVLCRGKEPIALSADHKPNREDEYARIEAAGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPDPEVTFLPRAKDDECLILASDGLWDVMTNEEACDLARRRILFWHKKNGLSMSSERGEGIDPAAQAAAEFLSNRALLKGSKDNITVIVVDLKAQRKFKSKS* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4020 542 Pfam Protein phosphatase 2C 266 525 IPR001932 -
Lja1g4020 542 SMART PP2C_4 219 530 IPR001932 -
Lja1g4020 542 SUPERFAMILY PP2C-like 221 533 IPR036457 -
Lja1g4020 542 Gene3D - 216 542 IPR036457 -
Lja1g4020 542 PANTHER ALPHABET, ISOFORM E-RELATED 102 541 - -
Lja1g4020 542 ProSiteProfiles PPM-type phosphatase domain profile. 229 532 IPR001932 -
Lja1g4020 542 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN 102 541 - -
Lja1g4020 542 CDD PP2Cc 231 532 IPR001932 -
Lja1g4020 542 ProSitePatterns PPM-type phosphatase domain signature. 280 288 IPR000222 GO:0043169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4020 Lja-Chr1 50937458 50941862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4020 126 542 PP2C-type Phosphatase Gene Family AT1G17550 55.478 7.96e-161 466
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4020 K14497 - gmx:102662702 793.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4020 1 50937458 50941862 Lja1g4020 1 50937458 50941862 ECH