Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4015 ATGACAGATAAAAATCCTGTTTCACTACCACCGGATTCACCTGAGAGCGATTTCATCAACCAATGGCCTCAGGAGCTTTCTGAGTACTTGAAGCTTGATGATGATAATCAATGGCCAGATGATGATGATCATCCGGACCATTCATTTGCTAATTCTTGGCATGTCCTCAACCAGGACAATCAAACCAATCAAGTAGGTGACTTTGGAGGAAGTAGCAGCAATGTTGAGGGGTCTTCAACCAATGTTAATATTGAGGATGAGAAGGCAGTTAAAGAAAAAGTTTCATTCAAAACCAAGTCAGAGGTTGAAATACTGGATGATGGGTTCAAGTGGAGAAAGTATGGAAAGAAGATGGTGAAAAACAGTCCCAATCCAAGGAACTACTACAGGTGTTCAGTGGAGGGATGTCGTGTGAAGAAAAGAGTAGAGAGAGATAGGGATGATCCAAGTTATGTAATAACAACCTATGAAGGCACCCATACTCACCCAAGTTCTTACTAG 501 0.4152 MTDKNPVSLPPDSPESDFINQWPQELSEYLKLDDDNQWPDDDDHPDHSFANSWHVLNQDNQTNQVGDFGGSSSNVEGSSTNVNIEDEKAVKEKVSFKTKSEVEILDDGFKWRKYGKKMVKNSPNPRNYYRCSVEGCRVKKRVERDRDDPSYVITTYEGTHTHPSSY* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4015 166 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 1 164 - -
Lja1g4015 166 Pfam WRKY DNA -binding domain 106 163 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja1g4015 166 MobiDBLite consensus disorder prediction 58 84 - -
Lja1g4015 166 SMART WRKY_cls 105 164 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja1g4015 166 Gene3D WRKY domain 89 165 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja1g4015 166 SUPERFAMILY WRKY DNA-binding domain 98 164 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja1g4015 166 ProSiteProfiles WRKY domain profile. 100 165 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja1g4015 166 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 1 164 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4015 Lja-Chr1 50911167 50912503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4015 28 164 WRKY Transcription Factor Family AT5G26170 52.229 1.77e-44 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lja1g4015 WRKY 2.4e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4015 - - lja:Lj1g3v1787630.1 254.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4015 1 50911167 50912503 Lja1g4015 1 50911167 50912503 ECH