Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4012 ATGAGTTTCAGTGCAGCCAAGGATGATTCAGGTTCTGACATTAACATCCCTAGAGATATTGATTGGCACATGCTTGATAAGACTAGATTTTTCTTCATGGGTGCTGCTTTGTTCTCTGGTGTTTCAACTGCTCTTTATCCCATGGTGGTGTTGAAGACTCGCCAACAGGTTTCTTCTGCACAATACTCTTGCATCAACATGTCCTCTGCCATTATGCGCTATGAAGGCATAAGAGGGTTTTACAAAGGTTTTGGGACTTCTTTGATGGGAACCATCCCTGCTAGAGCACTTTACATGGGTTCCCTTGAAGTCACCAAGACCAATGTTAGCAATGCTTTGGTGGAATTGGGGTTTTCAGACACCACTTCCACTGCAGTAGCTAGTGCTGCAGCTGGAGTAGCTTCTGCTATGGCTGCACAACTAGTTTGGACCCCAATTGATGTTGTGAGCCAGAGGCTAATGGTTCAAGGAACCGGTGGAAGCAAAACTATGCTGGCAAATCTCAACTCTGAGAGTTACAGGAATGGATTTGATGCTTTCAGGAAAATCCTTTGTGCTGATGGACCTAAAGGGTTCTACAGAGGATTTGGGATTTCATTGCTGACTTATGCTCCCTCTAATGCTGTTTGGTGGACTTCTTACTCCATGGTTCATAGGTTCATTTGGGGTTCTTTTGGTCCCTACATGGGGCAAAGGGATAATGTGTGTGGTTTTAGGCCTGATTCCAAGGCAATTGTTGCTGTTCAAGGTTTGAGTGCTGTTGTGGCAAGTGGGGTATCTGCAATTGTGACCATGCCACTGGACACAATCAAGACCAGGTTGCAGGTGCTGGATACAGAGGAGAATGGACGAAGGAGGCCTTTAACTTCTGTGCAGACTGTGAGGAATTTGGTGAAGGAAGGTGGCTTGCTTGCTTGTTACAGAGGTCTGGGACCAAGGTGGGCTTCAATGTCAATGTCTGCAACAACCATGATCACTACTTATGAGTTTGTGAAGAGGATGTCTACAAAGAGTGAAAGCTAA 1023 0.4545 MSFSAAKDDSGSDINIPRDIDWHMLDKTRFFFMGAALFSGVSTALYPMVVLKTRQQVSSAQYSCINMSSAIMRYEGIRGFYKGFGTSLMGTIPARALYMGSLEVTKTNVSNALVELGFSDTTSTAVASAAAGVASAMAAQLVWTPIDVVSQRLMVQGTGGSKTMLANLNSESYRNGFDAFRKILCADGPKGFYRGFGISLLTYAPSNAVWWTSYSMVHRFIWGSFGPYMGQRDNVCGFRPDSKAIVAVQGLSAVVASGVSAIVTMPLDTIKTRLQVLDTEENGRRRPLTSVQTVRNLVKEGGLLACYRGLGPRWASMSMSATTMITTYEFVKRMSTKSES* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4012 340 ProSiteProfiles Solute carrier (Solcar) repeat profile. 123 220 IPR018108 -
Lja1g4012 340 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER-LIKE PROTEIN 1 339 - -
Lja1g4012 340 PRINTS Mitochondrial carrier protein signature 43 57 IPR002067 GO:0055085
Lja1g4012 340 PRINTS Mitochondrial carrier protein signature 253 275 IPR002067 GO:0055085
Lja1g4012 340 PRINTS Mitochondrial carrier protein signature 193 211 IPR002067 GO:0055085
Lja1g4012 340 Pfam Mitochondrial carrier protein 124 222 IPR018108 -
Lja1g4012 340 Pfam Mitochondrial carrier protein 248 338 IPR018108 -
Lja1g4012 340 Pfam Mitochondrial carrier protein 33 109 IPR018108 -
Lja1g4012 340 ProSiteProfiles Solute carrier (Solcar) repeat profile. 26 108 IPR018108 -
Lja1g4012 340 Gene3D Mitochondrial carrier domain 29 340 IPR023395 -
Lja1g4012 340 ProSiteProfiles Solute carrier (Solcar) repeat profile. 244 334 IPR018108 -
Lja1g4012 340 SUPERFAMILY Mitochondrial carrier 24 331 IPR023395 -
Lja1g4012 340 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 1 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4012 Lja-Chr1 50887343 50889149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4012 13 339 Chloroplast and Mitochondria Gene Families AT5G26200 66.768 9.41e-160 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4012 K15121 - gmx:100784202 523.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4012 1 50887343 50889149 Lja1g4012 1 50887343 50889149 ECH