Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4011 ATGGACGAACGCTACAACCCCCGCACCGTCGAAGAGGTCTTCAGAGATTTCAAGGGCCGCCGAGCCGCCATCGTTAAGGCCCTCACCACCGATGTTGATGACTTCTTCCACCAGTGTGATCCAGAGAAGGAAAACCTTTGCCTTTATGGATTTCCTAGTGAGGTCTGGGAAGTCAATCTGCCTGCTGAGGAGGTGCCTCCAGAACTTCCAGAGCCAGCATTAGGTATTAACTTTGCCAGAGACGGGATGGAAGAAAAGGATTGGCTATCCTTGGTCGCTGTGCACAGTGATGCATGGTTAATTTCTGTGGCTTTTTATTTCGGTGCTAGGTTTGGATTTGATAGGATGGATAGGAAGCGACTGTTTGGTATGATCAATGATCTTCCAACAGTATTTGAGGTTGTTACAGGAATGGCCAAGAAACAAGGAAAGGAAAAGACATCATTTTCTAATCATAGCAGTAACAAACCCAAATCAAACCCTAAGAAAGGTTCTGAATCTCAAGTGAAGTATTCAAAGGCAATGCCATCAAAGGACGAGGATGAGGATGGTTTGGAAGAGGAAGATGAAGATGAGCATGGAGAGACTCTGTGTGGGGCGTGTGGAGATAGCTATGCAGCTGATGAGTTCTGGATCTGCTGCGACATCTGTGAGAAGTGGTTCCATGGAAAATGTGTGAAGATTACCCCTGCAAAGGCTCAGCATATCAAGCACTACAAATGTCCATCTTGCAGCAACAAGAGAGCTAGAACTTGA 756 0.463 MDERYNPRTVEEVFRDFKGRRAAIVKALTTDVDDFFHQCDPEKENLCLYGFPSEVWEVNLPAEEVPPELPEPALGINFARDGMEEKDWLSLVAVHSDAWLISVAFYFGARFGFDRMDRKRLFGMINDLPTVFEVVTGMAKKQGKEKTSFSNHSSNKPKSNPKKGSESQVKYSKAMPSKDEDEDGLEEEDEDEHGETLCGACGDSYAADEFWICCDICEKWFHGKCVKITPAKAQHIKHYKCPSCSNKRART* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4011 251 SMART PHD_3 197 245 IPR001965 -
Lja1g4011 251 SUPERFAMILY FYVE/PHD zinc finger 187 248 IPR011011 -
Lja1g4011 251 Pfam PHD-finger 198 247 IPR019787 -
Lja1g4011 251 ProSiteProfiles Zinc finger PHD-type profile. 195 247 IPR019787 -
Lja1g4011 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 246 IPR013083 -
Lja1g4011 251 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 3 250 - -
Lja1g4011 251 ProSitePatterns Zinc finger PHD-type signature. 198 244 IPR019786 -
Lja1g4011 251 PANTHER CPG BINDING PROTEIN 3 250 IPR045104 GO:0006355|GO:0042393
Lja1g4011 251 CDD PHD_AL_plant 197 247 IPR044104 -
Lja1g4011 251 MobiDBLite consensus disorder prediction 148 172 - -
Lja1g4011 251 Pfam Alfin 9 137 IPR021998 GO:0006355|GO:0042393
Lja1g4011 251 MobiDBLite consensus disorder prediction 143 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4011 Lja-Chr1 50881578 50886504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4011 5 251 Alfin-like Transcription Factor Family AT3G42790 75.304 6.58e-120 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Lja1g4011 Alfin 3.2e-67 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4011 - - gmx:100797908 429.483
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4011 1 50881578 50886504 Lja1g4011 1 50881578 50886504 ECH
Lja4g1539 4 14332096 14335706 Lja1g4011 1 50881578 50886504 ECH
Lja6g2026 6 48361748 48365637 Lja1g4011 1 50881578 50886504 ECH