Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4008 ATGGATGATCATAACAATAATTACAACTATACTGATATCAATATCGGCTTTGGTGTTCCATTTCATGACCCATACGAAGTTCCTTTCAGTCCAAGCTATTTCAATGTCACCAATCCCACACTGGACGATTTATCCAACATCAACGATAACAATATCAACAACAACAATGGTGGCATTTCCAGTTACTGTCCTCTGCCCCAACAACAAAATTTCAACAATGGAATCAGTACTAGTTATTCTGCTCTGCCTCCTCTGCCCCAACAACAAGATTTCACCAATGGAGGATTCAGTGCTAGTTACTCTCCTCTGCCTCAACAACAAGATTATATAAACAATGGAGGAGTCAGTGCTAGTTACTCTGCCCTGCCTTCTCTGCCTCAACAACAAGATTTCACCAACAGTGGATTTCAACTTCAACAGGGACAGGGTAGCACTAGTACTAGTTATCCCTTTTCCTATCCAATGAATCCATTGATGCAAGATCAATTTTCGCAGAGCAATTTTTCCATTGGAGGACAAGAACAACAACAACAACAAGGAGGGGTTGTTGCAGGGAACTTCCAACAAGAAGTTTCATCAACACTGCATATTGGGGAACAGAGTCAGCAGTCTCCAAATGGGAATGATCAGGGAGTGACACAGAGTCTCAAACTAGGTGTTTATCGAGACTACTGGCCTCCCACAAAAGCACCATTCTTTTGCAATTGCTGTGAAGTTCTCAGAGTAATCCTTCACACCAATGGTCTTTTCTTTGAAAAGCTTGAGATTCATGGAAGGCTAGGGATGATTATTCACGCAGTTCACCATCAGAATATTAATTGGGATGCTACTTCCACCTCTGAATATCAAAAGATTGAGTTTGTCGGGAGAACCATCCAAGAAATCAAGCAATTTCTGGTGGATTACTGCGAGGAGCGTAATACAGAAGGCTCCTTGATGTTGCAAGATCCCCTATCTGCCTATTATGAGACCATCTGCAGTGGAATGGATTGGGTTGAAGAACTAAAAGATGATCTAATTGATTCAGATGAATCTGAAGATGATAACATGGAGCAAGAGGGCGGCAATGCATCCACTTCGACTTCGAAACGAGACCTCGCAGTACAGAGGGAGAGAGCAGCAAGGATGACATTGAATGATCTGAGCGATTACTTTCATCTTCCAATTGAACAGGCATCAAAACATGTGAACTTATGCCCCACTGTGCTGAAGAAAATTTGCAGGAGAGATGGATTAGAACGATGGCCTTACAGAAAGGTGAAAAGTCTTATGAAGCAGATCACAGTGCTGGGAGTGCAAGCGAAAGCAAATAATCCGGCGACAAGGGAAAGGACTAGAGCGGAAATTAGGAAACTCCAAAAAGAAATCCTTGATGCTTGTAATGGACTTGTCCCAAGCGTATTGCAGAACATCATGGAGCAGCAGTAG 1428 0.4251 MDDHNNNYNYTDINIGFGVPFHDPYEVPFSPSYFNVTNPTLDDLSNINDNNINNNNGGISSYCPLPQQQNFNNGISTSYSALPPLPQQQDFTNGGFSASYSPLPQQQDYINNGGVSASYSALPSLPQQQDFTNSGFQLQQGQGSTSTSYPFSYPMNPLMQDQFSQSNFSIGGQEQQQQQGGVVAGNFQQEVSSTLHIGEQSQQSPNGNDQGVTQSLKLGVYRDYWPPTKAPFFCNCCEVLRVILHTNGLFFEKLEIHGRLGMIIHAVHHQNINWDATSTSEYQKIEFVGRTIQEIKQFLVDYCEERNTEGSLMLQDPLSAYYETICSGMDWVEELKDDLIDSDESEDDNMEQEGGNASTSTSKRDLAVQRERAARMTLNDLSDYFHLPIEQASKHVNLCPTVLKKICRRDGLERWPYRKVKSLMKQITVLGVQAKANNPATRERTRAEIRKLQKEILDACNGLVPSVLQNIMEQQ* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4008 475 PANTHER PROTEIN RKD4 80 461 IPR044607 GO:0003700
Lja1g4008 475 MobiDBLite consensus disorder prediction 343 365 - -
Lja1g4008 475 ProSiteProfiles RWP-RK domain profile. 358 444 IPR003035 -
Lja1g4008 475 PANTHER RWP-RK DOMAIN PROTEIN 80 461 - -
Lja1g4008 475 Pfam RWP-RK domain 376 423 IPR003035 -
Lja1g4008 475 MobiDBLite consensus disorder prediction 126 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4008 Lja-Chr1 50822793 50825013 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4008 333 423 AtRKD Transcription Factor Family AT4G35590 39.560 4.83e-13 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Lja1g4008 RWP-RK 1.1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4008 - - cam:101503746 320.472