Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4005 ATGGATGGTAATAAGCAGCAAGCAAGTGAAGTGAGCATGATAGAGAAGAGAAGAGAAGTGGTGGTGACCATTGCAAATGCTGCAGGTGGAGAGAGCCATGACTTGAAAGTTGTTGAACCTTCCACACCAAGGGTGGATTCACCTCAGAGAATGGAAAATGAGGTTTCTGCAGCTGCAACAAAGTCACCACCCTTGAACTGTGCTTCCCCTGAAATAAGGTTCATGCCTAGTCCAAACAAGCCCCCCAAAATTCCCACCACCACCAACAACAACAACCTCATCAGAAGGAAATCACTCTCAAGGTCAGTGTATTCCAAGCCCAAATCAAGATTTGGTGAACAACCTTACATTGATGGTGGTACTACCATTTTAGAAGAGAATGAAACTGTAACTTTGCAAGAACAAATAGGTTCACCATATAGAAACTCTTTCAAATCTGGGGTGGTTAATAGAACTATCTCCATCACTTCTGTTATCACTCCCAGGACACCATTGATGGCTTCTCCTGGTCCTACTGAGGATCCTGATGAAATCATTTACAAGAAGGTTGAATTGAGCAAAGGATACCATAGGAGACTGACAACTAAGGTTTTGATTGAATGGTTTGTGTTTGTATTCATTTTTGGTAACCTGCTTGCTAGCTTAACAGTTGGCAAGTTGAGAAATTTCAAGATTTGGGGTTTAGGGTTTTGGAGGTGGTGTGTGCTTGTGATGGTGACATTTTGTGGCTTGTTGGTCTCCAAATGGTTCATGCACCTTGTTGTTTTCTTGATTGAGATGAATTTCTTGTTGAAGAAAAAGGTGTTGTACTTTGTCCATGGGCTGAAGAAATGTGTGCAGGTCTTCATTTGGCTTGGCTTGGTTCTTATCACATGGGTTCTGTTAATCAATAGCGGCTCGGTCCGGCGATCGGATCTTGCCAATAAAATTTTGGATGGTATAACATGGACTCTTGTTTCCTTTCTCATTGGAGCATTCCTGTGGTTCATAAAGACATTGTTGCTGAAGATTTTGGCATCAACTTTCCATGTGAAATCGTTCTTCGATCGGATTCAAGAATCAATATTCCATCAGTATATTCTGCAGACTCTCTCCGGGCCTCCACTTATAGAAGAGGCTGAGAAGGTTGGGGGATCGCAAAGCATCGGTCATTTTAGTTTCAGGAGCACAACTAGTAAAGGAGGTAAAAAGAAAGAGGTTATTGATATGGCAAAGCTTCACCAGATAAAGCAAGAGAAAGTTTCTGCGTGGACAATGAAACTTTTGATAGATGCGGTGACAAACTCAAGGCTTACCACAATCTCTAATTCACTGGATGAAAGTTTCTATGATTGTGAAAATGAACAAGCTGATAAAGAGATTACAAATGAGATGGAAGCAACTGCTGCAGCCTACTACATTTTTAGGAATCTTTCTGCGCCTGGTTGCACGTACATTGATGATGATGAACTGCGAAGGTTCATGATTAAGGAAGAAGTGCGTTATATATATCCCCTACTAGCTGAAGCAGAGACGGGACAAATTACCAGAAAGTCATTAACAGCATGGGTGTTGAAGGTATACCAAGAACGCAGAGCATTGGCACATGCCTTAAGCGACACCAAAACAGCTGTGAAACAATTAAACAAGCTTATATCAGGGCTCTTGGTAGTTGTGACCTTAGTAGTGTGGCTTCTGCTAATGGAGATCGCAACAACAAAATTGCTTTTATTCCTCTCGTCGCAGCTATTGCTTGCAGGTTTCATGTTTTCAAACACATGCAAGAATATATTTGAAGCTATCATCTTTGTATTCGTAATGCATCCGTTTGATGTTGGTGATCGATGTGTTGTAGATGGTGTTCAGATGGTTGTTGAAGAAATGAATATATTGACAACAGTCTTCTTGAAAGCTAATAATGAGAAAGTTTACTATCCAAACTCTGTTCTGGCCACAAAACCCATTAGCAACTATTACAGAAGCCCAGATATGGTTGATAATGTAGATTTCTCAATTGATTTCATGACACCAGCAGAGAAAATTGGGGCCCTGAAGGAAAATATAAAGAGGTACGTGGAGAAAAATCCCCAATACTGGCATCCTGGTCACAGCTTAATTGTGATGGAGATTGAAAATGTGAATAAGATTAAGATGAGTCTCTTTGTTATCCACACAATGAACTTTCAAGAGTATCCAGAGAAGAGTAAGCGAAGAAGTGAGCTGGTGATGGAAATAAAGAAAATATTTGAAGAGCTTAATATCAGATACAACCTTCTTCCGCAAGATGTTCATCTCAGACATGTGGAACCAGATATGAGTGCACACAAATAG 2310 0.4056 MDGNKQQASEVSMIEKRREVVVTIANAAGGESHDLKVVEPSTPRVDSPQRMENEVSAAATKSPPLNCASPEIRFMPSPNKPPKIPTTTNNNNLIRRKSLSRSVYSKPKSRFGEQPYIDGGTTILEENETVTLQEQIGSPYRNSFKSGVVNRTISITSVITPRTPLMASPGPTEDPDEIIYKKVELSKGYHRRLTTKVLIEWFVFVFIFGNLLASLTVGKLRNFKIWGLGFWRWCVLVMVTFCGLLVSKWFMHLVVFLIEMNFLLKKKVLYFVHGLKKCVQVFIWLGLVLITWVLLINSGSVRRSDLANKILDGITWTLVSFLIGAFLWFIKTLLLKILASTFHVKSFFDRIQESIFHQYILQTLSGPPLIEEAEKVGGSQSIGHFSFRSTTSKGGKKKEVIDMAKLHQIKQEKVSAWTMKLLIDAVTNSRLTTISNSLDESFYDCENEQADKEITNEMEATAAAYYIFRNLSAPGCTYIDDDELRRFMIKEEVRYIYPLLAEAETGQITRKSLTAWVLKVYQERRALAHALSDTKTAVKQLNKLISGLLVVVTLVVWLLLMEIATTKLLLFLSSQLLLAGFMFSNTCKNIFEAIIFVFVMHPFDVGDRCVVDGVQMVVEEMNILTTVFLKANNEKVYYPNSVLATKPISNYYRSPDMVDNVDFSIDFMTPAEKIGALKENIKRYVEKNPQYWHPGHSLIVMEIENVNKIKMSLFVIHTMNFQEYPEKSKRRSELVMEIKKIFEELNIRYNLLPQDVHLRHVEPDMSAHK* 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4005 769 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 16 758 IPR016688 -
Lja1g4005 769 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 9 16 758 - -
Lja1g4005 769 MobiDBLite consensus disorder prediction 46 63 - -
Lja1g4005 769 Pfam Mechanosensitive ion channel 543 748 IPR006685 GO:0016020|GO:0055085
Lja1g4005 769 Gene3D - 602 651 IPR023408 -
Lja1g4005 769 PIRSF Memb_At2g17000 4 768 IPR016688 -
Lja1g4005 769 MobiDBLite consensus disorder prediction 33 66 - -
Lja1g4005 769 SUPERFAMILY Sm-like ribonucleoproteins 591 651 IPR010920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4005 Lja-Chr1 50756498 50760655 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4005 38 758 Mechanosensitive Ion Channel Family AT5G12080 57.025 0.0 820
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4005 K22048 - gmx:100777617 1125.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4005 1 50756498 50760655 Lja1g4005 1 50756498 50760655 ECH