Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3998 ATGGATTTTAGCTGGTCTCCAACTGATCCTATCATTGCACTCTTTGTTCCTGAGAGTGGTGGTGGTAACCAGCCTGCTAGGTGGCAAAGCAATGGAGATTACCTTGCTGTTAATGTAGACCGACATACTAAAACAAAAAAGAGTACATACACAGGCTTTGAGCTTTTTCGTATAAAAGAAAGAGACATACCAATTGAGGTTCTGGAGCTTGAGAATAAGAATGATAAGATAATTGCATTTGCATGGGAGCCAAAAGGCCATAGATTTGTAGTTATTCATGGTGATGACTCTAAGCCTGATGTTAGCATTTACTCTATGCGGACTGCTCAGAAAGCTGGCTGGGTTTCAAAGCTCACTGCTCTGAAAGGCAAGCAGGCAAATGCTTTGTTTTGGTCTCCTGCAGGTCGCTTCATTGTAGTAGCAGGGTTGAAAGGCTTCAATGGACAGTTGGAGTTTTACAATGTTGATGAGCTTGAAACAATGGTTACTGCTGAACATTTTATGACAACAGATATTGAATGGGATCCAACTGGAAGGTATGTTACAACTTCTGTGACTTCAGTTCATGATGTGGAAAATGGTTTCAACATATGGTCTTTCAGTGGCAAGCATCTTTATCGGATAATGAAGGATCACTTCTTTCAGTTCTCGTGGAGAGCAAGGCCGCCATCTTTCTTGACTCCTGAGAAAGAGGAAGAGATTGCAAATAATTTGAAGAAGTATAGTAAGAAATATGAGGCAGAAGATCAAGATGAATCGATGTTGCTGAGTGAGCAGGAGCAAGAGAAGTGTAGAATGTTGAAAGAAGAGTGGGACATGTGGGTTAATGAATGGAAGTGGATGCATGAAGAAGAGAAGTTACAGAGGGAACAGCATAGGGATGGAGAGACAAGTGACGAAGAGGAGGAATACGAAGCAAAAGACATTGAAGTCGAGGAAGTTATAGATGTATCTGAAGAGATCCTTCACTTTGAGTATGGTCAAGAATGA 990 0.4121 MDFSWSPTDPIIALFVPESGGGNQPARWQSNGDYLAVNVDRHTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFVVIHGDDSKPDVSIYSMRTAQKAGWVSKLTALKGKQANALFWSPAGRFIVVAGLKGFNGQLEFYNVDELETMVTAEHFMTTDIEWDPTGRYVTTSVTSVHDVENGFNIWSFSGKHLYRIMKDHFFQFSWRARPPSFLTPEKEEEIANNLKKYSKKYEAEDQDESMLLSEQEQEKCRMLKEEWDMWVNEWKWMHEEEKLQREQHRDGETSDEEEEYEAKDIEVEEVIDVSEEILHFEYGQE* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3998 329 MobiDBLite consensus disorder prediction 286 305 - -
Lja1g3998 329 PANTHER BNACNNG51870D PROTEIN 28 322 - -
Lja1g3998 329 Gene3D - 2 268 IPR015943 GO:0005515
Lja1g3998 329 PANTHER BNACNNG51870D PROTEIN 2 27 - -
Lja1g3998 329 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 2 27 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lja1g3998 329 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 28 322 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lja1g3998 329 Pfam Eukaryotic translation initiation factor eIF2A 27 216 IPR013979 -
Lja1g3998 329 SUPERFAMILY DPP6 N-terminal domain-like 5 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3998 Lja-Chr1 50735065 50736626 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3998 1 323 Eukaryotic Initiation Factors Gene Family AT5G27640 70.571 6.91e-178 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3998 K03253 - gmx:100779711 563.533