Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3995 ATGGCTACTCATCTTCTCAGGCTATCTCTCTCCCCGCAACCTAAACTCTCCTTCAATTCCACAGCCAACAATCATGACCTCCACTTCATTTCTCTTCTCCCGCCGAATCGACGCCGCAACCGCAACCTCCACCGCCGGGAAACTCTCCGGCCACATCTCGCCGTATCAAACTCCTTCCAGACCGAGACTATCTCCACGGAATCAGCAGCTGGTCTTCCAGGCCGAGCACAGGGCGAAGACTCACCGGTTCTACTCGACGTAACCGGGATGATGTGCGGCGCGTGCGTCTCCCGAGTCAAAAAAATCTTATCCGCCGACGACCGAGTTGACTCGGCCGTCGTCAACATGCTGACCGATACCGCAGCCGTGAAGCTGAAACCGCTCGAGGCGGAGGTGGATTCGGCGAGTGTCGCGGAGAGCCTTGCTCGGAGACTGAGCGATTGCGGGTTTCCGGCGAAGAGGAGAGCTTCTGGCTCGGGAGTGGCGGAGAGTGTGAGGAAGTGGAAGGAGATGGTGAAGAAGAAGGAGGATCTGGTTGCTAAGAGTCGGAACCGCGTTGCTTTCGCTTGGACTCTGGTCGCACTGTGCTGTGGAACGCACGCTTCGCATATTCTTCATTCATTGGGCATTCACATTCATGGACCATTTTTGGAAATTCTTCACAATTCATACGTGAAAGGTGGTTTAGCTTTGGGCTCTCTCTTGGGACCAGGACGAGAGTTGCTCTTTGATGGCTTAAGCGCGTTTAAGAAGGGGTCGCCGAATATGAACTCTCTCGTGGGATTTGGTTCTGTAGCTGCTTTCATCATCAGTTTGATCTCGCTATTGAACCCCGGGTTGGCGTGGGATGCGACATTCTTTGATGAGCCGGTCATGCTTCTTGGTTTCGTGCTTCTGGGGCGTTCGCTCGAGGAAAAGGCAAGGATTCAGGCTTCTAGTGATATGAATGAACTTCTTTCACTGATATCTACCCAGTCAAGACTTGTGATTACTTCATCAGAAGGTTCCCCATCTACTGACAGTGTGCTTTGTGGTGACACAATTTGTGTTGAAGTCCCAACTGATGATATTAGAGTAGGTGACTCGGTGTTGGTGTTGCCTGGAGAAACTATTCCTATAGATGGAAGGGTTATCTCAGGAAGAAGTGTTGTGGATGAATCCATGCTTACAGGAGAATCACTTCCAGTATTTAAGGAAGCAGGCCTCTCAGTTTCAGCAGGAACTATAAATTGGGATGGTCCTTTAAGGATTGAAGCTACTTCGACTGGCTCCAACACAATGATATCCAAGATTGTACGCATGGTTGAGGATGCTCAATCGCGTGAAGCACCTGTACAAAGGCTTGCAGATTCAATAGCAGGGCCATTTGTATACAGTGTAATGACTCTATCTGCAGCAACGTTTGCATTTTGGTATTTTATTGGGTCACACATATTTCCTGATGTTTTGCTCAATGATATTGCGGGCCCAGAAGGAGATCCCTTGCTTTTGAGTTTGAAACTCTCTGTAGATGTTTTAGTTGTTTCTTGTCCTTGTGCACTGGGTCTTGCCACACCGACAGCGATACTGGTTGGCACCTCACTTGGGGCAAGAAAAGGACTTCTTATTAGAGGAGGGGATGTGCTAGAACGCTTAGCCAGCATAAATTATATTGCTCTAGACAAGACAGGAACCCTCACTAGAGGAAAACCAGTTGTTTCTGCTATAGGTTCTCTTCAATATGGTGAATCAGATATTCTTCAGATCGCTGCTGCAGTGGAGAAAACAGCATCTCATCCTATAGCAAAGGCTATTGTCAACAAAGCTGATTCATTAGACTTGGTCCTTCCAGTCACAAAAGGACAGTTAGTTGAACCAGGTTTTGGAACCTTAGCAGAAATAGATGGACGTTTGGTTGCAGTTGGGTCTTTAGAATGGGTCCATCAACGCTTCCAGACTAGAATGAACCCATCTAATTTGATGAATGTGGAACAGACTTTGCTAAATCATTCATTGAATTCAACATCTTCAAAGTATTCAAGAACTGTTGTCTATGTTGGACGTGAAGGAGAAGGCATCATTGGTGCTATAGCCTTATCTGACATCGTGCGTGAAGATGCTGAATCTACTGTGATGAGGCTCAAGCAGAAGGGGATTAAAATGGTTCTCCTATCCGGAGACAGGGAAGAGGCAGTTGCAACCATTGCAGAGACTGTTGGAATTGAAAATGATTTCGTCAAAGCATCTCTGGCTCCACAGCAGAAATCTGAATTTATTTCTTCTCTGAAAGCTGCTGGGCATCATGTTGCAATGGTAGGTGATGGGATAAATGATGCACCTGCTTTGGCTGTAGCTGATGTTGGGATTGCTCTGCAGAATGAAGCTCAAGAGAATGCTGCCTCCGATGCAGCATCCATTATACTTCTGGGGAACAAAATTTCACAAGTTGTCGATGCAATAGACCTAGCACAGTCAACAATGGCGAAAGTGTACCAAAATTTGTCTTGGGCAGTAGCCTATAATGTTATTGCCATTCCCATTGCTGCTGGCGTGTTACTTCCCCACTTTGACTTTGCTATGACACCTTCACTTTCAGGAGGAATGATGGCTCTGAGCTCCATCTTTGTGGTTAGCAACTCACTGCTTCTACAGCTCCATGGGTCTCAGACTTCCAGAAAGGGCTCACTGACATGA 2673 0.4721 MATHLLRLSLSPQPKLSFNSTANNHDLHFISLLPPNRRRNRNLHRRETLRPHLAVSNSFQTETISTESAAGLPGRAQGEDSPVLLDVTGMMCGACVSRVKKILSADDRVDSAVVNMLTDTAAVKLKPLEAEVDSASVAESLARRLSDCGFPAKRRASGSGVAESVRKWKEMVKKKEDLVAKSRNRVAFAWTLVALCCGTHASHILHSLGIHIHGPFLEILHNSYVKGGLALGSLLGPGRELLFDGLSAFKKGSPNMNSLVGFGSVAAFIISLISLLNPGLAWDATFFDEPVMLLGFVLLGRSLEEKARIQASSDMNELLSLISTQSRLVITSSEGSPSTDSVLCGDTICVEVPTDDIRVGDSVLVLPGETIPIDGRVISGRSVVDESMLTGESLPVFKEAGLSVSAGTINWDGPLRIEATSTGSNTMISKIVRMVEDAQSREAPVQRLADSIAGPFVYSVMTLSAATFAFWYFIGSHIFPDVLLNDIAGPEGDPLLLSLKLSVDVLVVSCPCALGLATPTAILVGTSLGARKGLLIRGGDVLERLASINYIALDKTGTLTRGKPVVSAIGSLQYGESDILQIAAAVEKTASHPIAKAIVNKADSLDLVLPVTKGQLVEPGFGTLAEIDGRLVAVGSLEWVHQRFQTRMNPSNLMNVEQTLLNHSLNSTSSKYSRTVVYVGREGEGIIGAIALSDIVREDAESTVMRLKQKGIKMVLLSGDREEAVATIAETVGIENDFVKASLAPQQKSEFISSLKAAGHHVAMVGDGINDAPALAVADVGIALQNEAQENAASDAASIILLGNKISQVVDAIDLAQSTMAKVYQNLSWAVAYNVIAIPIAAGVLLPHFDFAMTPSLSGGMMALSSIFVVSNSLLLQLHGSQTSRKGSLT* 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3995 890 SFLD p-type atpase 535 817 IPR044492 -
Lja1g3995 890 Gene3D - 75 156 - -
Lja1g3995 890 ProSitePatterns E1-E2 ATPases phosphorylation site. 554 560 IPR018303 -
Lja1g3995 890 Pfam E1-E2 ATPase 342 532 - -
Lja1g3995 890 Pfam haloacid dehalogenase-like hydrolase 548 779 - -
Lja1g3995 890 Gene3D - 563 696 IPR023299 GO:0000166
Lja1g3995 890 CDD HMA 85 153 IPR006121 GO:0046872
Lja1g3995 890 Gene3D - 308 439 - -
Lja1g3995 890 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 344 854 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lja1g3995 890 SUPERFAMILY Calcium ATPase, transduction domain A 346 435 IPR008250 -
Lja1g3995 890 Pfam Heavy-metal-associated domain 85 150 IPR006121 GO:0046872
Lja1g3995 890 SUPERFAMILY HMA, heavy metal-associated domain 82 153 IPR036163 GO:0046872
Lja1g3995 890 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 554 647 IPR023299 GO:0000166
Lja1g3995 890 SUPERFAMILY HAD-like 550 873 IPR036412 -
Lja1g3995 890 SFLD C1.7: P-type atpase like 535 817 - -
Lja1g3995 890 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 256 876 IPR027256 GO:0006812|GO:0016021|GO:0019829
Lja1g3995 890 Gene3D - 543 816 IPR023214 -
Lja1g3995 890 SUPERFAMILY Calcium ATPase, transmembrane domain M 288 546 IPR023298 -
Lja1g3995 890 ProSiteProfiles Heavy-metal-associated domain profile. 82 154 IPR006121 GO:0046872
Lja1g3995 890 PRINTS P-type cation-transporting ATPase superfamily signature 710 720 - -
Lja1g3995 890 PRINTS P-type cation-transporting ATPase superfamily signature 552 566 - -
Lja1g3995 890 PRINTS P-type cation-transporting ATPase superfamily signature 765 784 - -
Lja1g3995 890 PRINTS P-type cation-transporting ATPase superfamily signature 688 699 - -
Lja1g3995 890 PRINTS P-type cation-transporting ATPase superfamily signature 385 399 - -
Lja1g3995 890 PANTHER ATP7, ISOFORM B 80 878 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3995 Lja-Chr1 50712670 50721879 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3995 248 877 Primary Pumps ATPases AT1G63440 38.043 1.64e-119 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3995 K17686 - gmx:100127402 1446.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3995 1 50712670 50721879 Lja1g3995 1 50712670 50721879 ECH